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水溶液 L-半胱氨酸中硫的溶剂化的 X 射线吸收光谱模型。

The x-ray absorption spectroscopy model of solvation about sulfur in aqueous L-cysteine.

机构信息

Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA.

出版信息

J Chem Phys. 2012 Nov 28;137(20):205103. doi: 10.1063/1.4767350.

Abstract

The environment of sulfur in dissolved aqueous L-cysteine has been examined using K-edge x-ray absorption spectroscopy (XAS), extended continuum multiple scattering (ECMS) theory, and density functional theory (DFT). For the first time, bound-state and continuum transitions representing the entire XAS spectrum of L-cysteine sulfur are accurately reproduced by theory. Sulfur K-edge absorption features at 2473.3 eV and 2474.2 eV represent transitions to LUMOs that are mixtures of S-C and S-H σ∗ orbitals significantly delocalized over the entire L-cysteine molecule. Continuum features at 2479, 2489, and 2530 eV were successfully reproduced using extended continuum theory. The full L-cysteine sulfur K-edge XAS spectrum could not be reproduced without addition of a water-sulfur hydrogen bond. Density functional theory analysis shows that although the Cys(H)S⋯H-OH hydrogen bond is weak (∼2 kcal) the atomic charge on sulfur is significantly affected by this water. MXAN analysis of hydrogen-bonding structures for L-cysteine and water yielded a best fit model featuring a tandem of two water molecules, 2.9 Å and 5.8 Å from sulfur. The model included a S(cys)⋯H-O(w1)H hydrogen-bond of 2.19 Å and of 2.16 Å for H(2)O(w1)⋯H-O(w2)H. One hydrogen-bonding water-sulfur interaction alone was insufficient to fully describe the continuum XAS spectrum. However, density functional theoretical results are convincing that the water-sulfur interaction is weak and should be only transient in water solution. The durable water-sulfur hydrogen bond in aqueous L-cysteine reported here therefore represents a break with theoretical studies indicating its absence. Reconciling the apparent disparity between theory and result remains the continuing challenge.

摘要

采用 K 边 X 射线吸收光谱(XAS)、扩展连续多重散射(ECMS)理论和密度泛函理论(DFT)研究了溶解在 L-半胱氨酸中的硫的环境。首次通过理论准确再现了代表 L-半胱氨酸硫的整个 XAS 光谱的束缚态和连续态跃迁。2473.3 eV 和 2474.2 eV 的硫 K 边吸收特征代表了到 LUMO 的跃迁,这些跃迁是 S-C 和 S-H σ*轨道的混合物,在整个 L-半胱氨酸分子中显著离域。2479、2489 和 2530 eV 的连续特征通过扩展连续理论成功再现。没有添加水-硫氢键,就无法再现完整的 L-半胱氨酸硫 K 边 XAS 光谱。密度泛函理论分析表明,尽管 Cys(H)S⋯H-OH 氢键较弱(约 2 kcal/mol),但硫的原子电荷受到这种水的显著影响。对半胱氨酸和水的氢键结构进行的 MXAN 分析得出了一个最佳拟合模型,该模型的特征是两个水分子串联,距离硫分别为 2.9 Å 和 5.8 Å。该模型包括一个 S(cys)⋯H-O(w1)H 的氢键,其长度为 2.19 Å,H(2)O(w1)⋯H-O(w2)H 的氢键长度为 2.16 Å。单独一个氢键的硫-水相互作用不足以完全描述连续态 XAS 光谱。然而,密度泛函理论的结果令人信服地表明,硫-水相互作用较弱,在水溶液中应该是短暂的。因此,本文报道的在水溶液中的 L-半胱氨酸中持久的硫-水氢键与理论研究表明其不存在的观点相矛盾。调和理论和结果之间的明显差异仍然是一个持续的挑战。

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