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使用替代酶进行三轴电喷雾探针在线消化的互补肽序列覆盖。

Complementary peptide sequence coverage using alternative enzymes for on-line digestion with a triaxial electrospray probe.

机构信息

Department of Chemistry, University of Tennessee, Knoxville, Tennessee, USA.

出版信息

J Am Soc Mass Spectrom. 2009 Nov;20(11):1983-7. doi: 10.1016/j.jasms.2009.07.022. Epub 2009 Aug 12.

DOI:10.1016/j.jasms.2009.07.022
PMID:19748285
Abstract

Using alternative enzymes for on-line digestion with a triaxial electrospray probe extends sequence coverage. This is the first report of utilization of our triaxial probe for on-line analysis with enzymes other than pepsin, suggesting potential for broader application. The probe allows access to processes occurring on a timescale and/or involving substrate conformations complementary to those for conventional (off-line) digestion. Some of the features observed in application to Abeta fibrils are suggestive of unique reactive intermediates during dissolution. Data obtained with enzyme mixtures suggest synergistic effects.

摘要

使用替代酶与三轴电喷雾探头进行在线消化可扩展序列覆盖范围。这是首次报道使用我们的三轴探头与胃蛋白酶以外的酶进行在线分析,表明具有更广泛的应用潜力。该探头允许访问在时间尺度和/或涉及与传统(离线)消化互补的底物构象上发生的过程。在应用于 Abeta 纤维时观察到的一些特征表明在溶解过程中存在独特的反应中间体。用酶混合物获得的数据表明存在协同效应。

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本文引用的文献

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Structural characterization of short-lived protein unfolding intermediates by laser-induced oxidative labeling and mass spectrometry.通过激光诱导氧化标记和质谱法对短寿命蛋白质解折叠中间体进行结构表征
Anal Chem. 2009 Jan 1;81(1):20-7. doi: 10.1021/ac801888h.
2
A triaxial probe for on-line proteolysis coupled with hydrogen/deuterium exchange-electrospray mass spectrometry.一种用于在线蛋白水解并与氢/氘交换-电喷雾质谱联用的三轴探头。
J Am Soc Mass Spectrom. 2007 Feb;18(2):208-17. doi: 10.1016/j.jasms.2006.09.011. Epub 2006 Oct 30.
3
Structural differences in Abeta amyloid protofibrils and fibrils mapped by hydrogen exchange--mass spectrometry with on-line proteolytic fragmentation.
通过氢交换-质谱联用在线蛋白水解片段化技术绘制的β淀粉样前原纤维和纤维的结构差异
J Mol Biol. 2006 Aug 25;361(4):785-95. doi: 10.1016/j.jmb.2006.06.066. Epub 2006 Jul 12.
4
Alanine scanning mutagenesis of Abeta(1-40) amyloid fibril stability.β淀粉样蛋白(1-40)淀粉样纤维稳定性的丙氨酸扫描诱变
J Mol Biol. 2006 Apr 7;357(4):1283-94. doi: 10.1016/j.jmb.2006.01.041. Epub 2006 Jan 30.
5
Molecular modeling of the core of Abeta amyloid fibrils.β-淀粉样蛋白原纤维核心的分子建模
Proteins. 2004 Nov 1;57(2):357-64. doi: 10.1002/prot.20222.
6
Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis.利用扫描脯氨酸诱变技术绘制β-淀粉样蛋白原纤维二级结构
J Mol Biol. 2004 Jan 16;335(3):833-42. doi: 10.1016/j.jmb.2003.11.008.
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Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins.使用在酸性条件下起作用的不同蛋白酶来提高大型蛋白质氢/氘交换中的序列覆盖率和分辨率。
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Enhanced correction methods for hydrogen exchange-mass spectrometric studies of amyloid fibrils.用于淀粉样纤维氢交换质谱研究的增强校正方法。
Protein Sci. 2003 Mar;12(3):635-43. doi: 10.1110/ps.0225703.
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Structural features of the Abeta amyloid fibril elucidated by limited proteolysis.通过有限蛋白酶解阐明的β-淀粉样蛋白原纤维的结构特征。
Biochemistry. 2001 Oct 2;40(39):11757-67. doi: 10.1021/bi010805z.
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