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脊椎动物发育过程中分割时钟基因的同步振荡。

Synchronized oscillation of the segmentation clock gene in vertebrate development.

作者信息

Uriu Koichiro, Morishita Yoshihiro, Iwasa Yoh

机构信息

Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, 812-8581, Japan.

PRESTO Japan Science and Technology Agency, 4-1-8 Honcho Kawaguchi, Saitama, 332-0012, Japan.

出版信息

J Math Biol. 2010 Aug;61(2):207-229. doi: 10.1007/s00285-009-0296-1. Epub 2009 Sep 16.

DOI:10.1007/s00285-009-0296-1
PMID:19756608
Abstract

In vertebrate somitogenesis, "segmentation clock" genes (her in zebrafish, hes in mouse, and hairy in chick) show oscillation, synchronized over nearby cells through intercellular interaction. In zebrafish, neighboring cells interact by Delta-Notch signaling to realize synchronization. Under Delta-Notch, however, a cell with a high expression of the segmentation clock gene tends to suppress its expression in adjacent cells, which might produce spatial heterogeneity instead of synchronized oscillation. Here we studied the conditions under which pre-somitic mesoderm cells show synchronized oscillation of gene expression mathematically. We adopted a model that explicitly considers the kinetics of the mRNA and proteins of the segmentation clock gene and cell-cell interaction via Delta-Notch signaling. From statistical study of a model with randomly generated parameters, we revealed how the likelihood that the system generates stable synchronized oscillation depends on the rate of each reaction in the gene-protein kinetics.

摘要

在脊椎动物体节发生过程中,“分割时钟”基因(斑马鱼中的her、小鼠中的hes以及鸡中的hairy)呈现振荡,通过细胞间相互作用在相邻细胞间实现同步。在斑马鱼中,相邻细胞通过Delta-Notch信号传导进行相互作用以实现同步。然而,在Delta-Notch信号作用下,分割时钟基因高表达的细胞倾向于抑制其在相邻细胞中的表达,这可能会产生空间异质性而非同步振荡。在此,我们从数学角度研究了体节中胚层细胞呈现基因表达同步振荡的条件。我们采用了一个明确考虑分割时钟基因的mRNA和蛋白质动力学以及通过Delta-Notch信号传导的细胞间相互作用的模型。通过对具有随机生成参数的模型进行统计研究,我们揭示了系统产生稳定同步振荡的可能性如何取决于基因-蛋白质动力学中每个反应的速率。

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本文引用的文献

1
Traveling wave formation in vertebrate segmentation.脊椎动物分节中的行波形成。
J Theor Biol. 2009 Apr 7;257(3):385-96. doi: 10.1016/j.jtbi.2009.01.003. Epub 2009 Jan 9.
2
Effects of intrinsic and extrinsic noise can accelerate juxtacrine pattern formation.内在噪声和外在噪声的影响可加速旁分泌模式的形成。
Bull Math Biol. 2008 May;70(4):971-91. doi: 10.1007/s11538-007-9286-x. Epub 2008 Mar 13.
3
Modeling the segmentation clock as a network of coupled oscillations in the Notch, Wnt and FGF signaling pathways.将分割时钟建模为Notch、Wnt和FGF信号通路中耦合振荡的网络。
J Math Biol. 2018 Jan;76(1-2):97-150. doi: 10.1007/s00285-017-1138-1. Epub 2017 May 25.
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A multi-cell, multi-scale model of vertebrate segmentation and somite formation.脊椎动物分节和体节形成的多细胞多尺度模型。
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Notch signalling synchronizes the zebrafish segmentation clock but is not needed to create somite boundaries.Notch信号通路使斑马鱼体节时钟同步,但并非形成体节边界所必需。
PLoS Genet. 2008 Feb;4(2):e15. doi: 10.1371/journal.pgen.0040015.
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Modeling the Hes1 oscillator.对Hes1振荡器进行建模。
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Synchrony dynamics during initiation, failure, and rescue of the segmentation clock.体节时钟启动、失败和挽救过程中的同步动力学
Science. 2007 Sep 28;317(5846):1911-5. doi: 10.1126/science.1142538. Epub 2007 Aug 16.
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Cell-based simulation of dynamic expression patterns in the presomitic mesoderm.基于细胞的体节中胚层动态表达模式模拟
J Theor Biol. 2007 Sep 7;248(1):120-9. doi: 10.1016/j.jtbi.2007.05.014. Epub 2007 May 21.
8
The segmentation clock in mice: interaction between the Wnt and Notch signalling pathways.小鼠中的体节时钟:Wnt信号通路与Notch信号通路之间的相互作用。
J Theor Biol. 2007 Sep 7;248(1):37-47. doi: 10.1016/j.jtbi.2007.05.003. Epub 2007 May 22.
9
Setting the tempo in development: an investigation of the zebrafish somite clock mechanism.设定发育节奏:斑马鱼体节时钟机制的研究
PLoS Biol. 2007 Jun;5(6):e150. doi: 10.1371/journal.pbio.0050150.
10
Priming, initiation and synchronization of the segmentation clock by deltaD and deltaC.由deltaD和deltaC对体节时钟进行启动、起始和同步。
Nat Cell Biol. 2007 May;9(5):523-30. doi: 10.1038/ncb1578. Epub 2007 Apr 8.