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多价组装在内在无序的动力蛋白中间链中。

Multivalency in the assembly of intrinsically disordered Dynein intermediate chain.

机构信息

Department of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331, USA.

出版信息

J Biol Chem. 2009 Nov 27;284(48):33115-21. doi: 10.1074/jbc.M109.048587. Epub 2009 Sep 16.

DOI:10.1074/jbc.M109.048587
PMID:19759397
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2785153/
Abstract

Dynein light chains are thought to increase binding efficiency of dynein intermediate chain to both dynein heavy chain and dynactin, but their exact role is not clear. Isothermal titration calorimetry and x-ray crystallography reported herein indicate that multivalency effects underlie efficient dynein assembly and regulation. For a ternary complex of a 60-amino acid segment of dynein intermediate chain (IC) bound to two homodimeric dynein light chains Tctex1 and LC8, there is a 50-fold affinity enhancement for the second light chain binding. For a designed IC construct containing two LC8 sites, observed the 1000-fold enhancement reflects a remarkably pure entropic chelate effect of a magnitude commensurate with theoretical predictions. The lower enhancement in wild-type IC is attributed to unfavorable free energy changes associated with incremental interactions of IC with Tctex1. Our results show assembled dynein IC as an elongated, flexible polybivalent duplex, and suggest that polybivalency is an important general mechanism for constructing stable yet reversible and functionally versatile complexes.

摘要

动力蛋白轻链被认为可以提高动力蛋白中间链与动力蛋白重链和动力蛋白激活蛋白之间的结合效率,但它们的确切作用尚不清楚。本文报道的等温热滴定法和 X 射线晶体学表明,多价效应是动力蛋白有效组装和调节的基础。对于与两个同源二聚体动力蛋白轻链 Tctex1 和 LC8 结合的动力蛋白中间链 (IC) 的 60 个氨基酸片段的三元复合物,第二个轻链的结合亲和力增强了 50 倍。对于含有两个 LC8 位点的设计 IC 结构,观察到的 1000 倍增强反映了一个显著的纯熵螯合效应,其大小与理论预测相符。野生型 IC 中较低的增强归因于与 IC 与 Tctex1 的增量相互作用相关的不利自由能变化。我们的结果表明组装的动力蛋白 IC 是一个长而灵活的多价双链体,并表明多价性是构建稳定但可还原且功能多样的复合物的重要一般机制。

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本文引用的文献

1
Polyvalent Interactions in Biological Systems: Implications for Design and Use of Multivalent Ligands and Inhibitors.生物系统中的多价相互作用:对多价配体和抑制剂设计与应用的启示
Angew Chem Int Ed Engl. 1998 Nov 2;37(20):2754-2794. doi: 10.1002/(SICI)1521-3773(19981102)37:20<2754::AID-ANIE2754>3.0.CO;2-3.
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Regulation of the processivity and intracellular localization of Saccharomyces cerevisiae dynein by dynactin.动力蛋白激活蛋白对酿酒酵母动力蛋白的持续运动能力及细胞内定位的调控
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5669-74. doi: 10.1073/pnas.0900976106. Epub 2009 Mar 17.
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Structure and functional role of dynein's microtubule-binding domain.动力蛋白微管结合结构域的结构与功能作用
Science. 2008 Dec 12;322(5908):1691-5. doi: 10.1126/science.1164424.
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Differences in dynamic structure of LC8 monomer, dimer, and dimer-peptide complexes.LC8单体、二聚体和二聚体-肽复合物的动态结构差异。
Biochemistry. 2008 Nov 18;47(46):11940-52. doi: 10.1021/bi801093k. Epub 2008 Oct 23.
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Dynein light chain LC8 is a dimerization hub essential in diverse protein networks.动力蛋白轻链LC8是多种蛋白质网络中必不可少的二聚化中心。
Biochemistry. 2008 Jan 15;47(2):503-8. doi: 10.1021/bi701995m. Epub 2007 Dec 20.
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In situ proteolysis for protein crystallization and structure determination.用于蛋白质结晶和结构测定的原位蛋白酶解
Nat Methods. 2007 Dec;4(12):1019-21. doi: 10.1038/nmeth1118. Epub 2007 Nov 4.
7
Structure and dynamics of LC8 complexes with KXTQT-motif peptides: swallow and dynein intermediate chain compete for a common site.含有KXTQT基序肽的LC8复合物的结构与动力学:吞咽蛋白和动力蛋白中间链竞争一个共同位点。
J Mol Biol. 2007 Aug 10;371(2):457-68. doi: 10.1016/j.jmb.2007.05.046. Epub 2007 May 24.
8
Structural and thermodynamic characterization of a cytoplasmic dynein light chain-intermediate chain complex.细胞质动力蛋白轻链-中间链复合物的结构与热力学特征
Proc Natl Acad Sci U S A. 2007 Jun 12;104(24):10028-33. doi: 10.1073/pnas.0703614104. Epub 2007 Jun 5.
9
Molecular basis for the functional interaction of dynein light chain with the nuclear-pore complex.动力蛋白轻链与核孔复合体功能相互作用的分子基础。
Nat Cell Biol. 2007 Jul;9(7):788-96. doi: 10.1038/ncb1604. Epub 2007 Jun 3.
10
Solving structures of protein complexes by molecular replacement with Phaser.使用Phaser通过分子置换法解析蛋白质复合物的结构。
Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):32-41. doi: 10.1107/S0907444906045975. Epub 2006 Dec 13.