Julius-Maximillians-Universität Würzburg, Institut für Organische Chemie, Am Hubland, 97074 Würzburg, Germany.
J Phys Chem A. 2009 Oct 29;113(43):11699-705. doi: 10.1021/jp9028084.
This paper presents an application of the new nonlinear global optimization routine gradient only tabu search (GOTS) to conformational search problems. It is based on the tabu search strategy which tries to determine the global minimum of a function by the steepest descent-modest ascent strategy. The refinement of ranking procedure of the original GOTS method and the exploitation of simulated annealing elements are described, and the modifications of the GOTS algorithm necessary to adopt it to conformation searches are explained. The utility of the GOTS for conformational search problems is tested using various examples.
本文提出了一种将新的非线性全局优化程序梯度禁忌搜索(GOTS)应用于构象搜索问题的方法。它基于禁忌搜索策略,该策略试图通过最速下降-适度上升策略来确定函数的全局最小值。描述了原始 GOTS 方法的排序过程的改进和模拟退火元素的利用,并解释了将 GOTS 算法修改为适应构象搜索所需的修改。使用各种示例测试了 GOTS 对于构象搜索问题的实用性。