Thiel-Egenter Conny, Holderegger Rolf, Brodbeck Sabine, Gugerli Felix
WSL Swiss Federal Research Institute, 8903 Birmensdorf, Switzerland.
Mol Ecol. 2009 Nov;18(21):4495-507. doi: 10.1111/j.1365-294X.2009.04360.x. Epub 2009 Sep 21.
Natural genetic breaks may indicate limitations to gene flow or the presence of contact zones of previously isolated populations. Molecular evidence suggests that genetic breaks have aggregated in distinct geographical areas. We propose a new application of well-established statistical methods for analysing multilocus genetic data to identify intraspecific genetic breaks. The methodological approach combines Bayesian clustering with a spatially explicit maximum-difference algorithm to visualize and quantify breaks between clusters. We used amplified fragment length polymorphism data of two co-distributed, silicicolous alpine plant species, Geum montanum and Geum reptans, exhaustively sampled on a consistent, regular grid over their entire range of the European Alps and the Carpathians. We found a distinct and highly similar allocation of genetic breaks in both species. The pattern of breaks did not conform to scenarios of glacial refugial survival, alternatively in peripheral refugia or on nunataks, as expected because of the species' ecologies (late-successional low alpine vs. early-successional high alpine). Our findings rather substantiated the postulate of a general pattern of genetic breaks in alpine plants and corresponded well with biogeographical regions formerly described. Our approach could serve as a tool not only for landscape genetics and comparative phylogeography, but also for floristics or faunistics to compare biogeographic with phylogeographic breaks.
自然遗传间断可能表明基因流动存在限制,或者存在先前隔离种群的接触区域。分子证据表明,遗传间断已聚集在不同的地理区域。我们提出了一种新的应用成熟统计方法来分析多位点遗传数据,以识别种内遗传间断。该方法将贝叶斯聚类与空间明确的最大差异算法相结合,以可视化和量化聚类之间的间断。我们使用了两种同域分布的石生高山植物——山地水杨梅(Geum montanum)和匍匐水杨梅(Geum reptans)的扩增片段长度多态性数据,在欧洲阿尔卑斯山和喀尔巴阡山脉的整个分布范围内,按照一致、规则的网格进行了详尽采样。我们发现这两个物种中遗传间断的分布明显且高度相似。间断模式不符合冰川避难所生存的情景,无论是在边缘避难所还是在冰原岛上,鉴于这两个物种的生态特征(演替后期的低海拔高山与演替早期的高海拔高山),这是预期中的情况。我们的研究结果证实了高山植物遗传间断普遍模式的假设,并且与先前描述的生物地理区域高度吻合。我们的方法不仅可以作为景观遗传学和比较系统地理学的工具,还可以用于植物区系学或动物区系学,以比较生物地理间断和系统地理间断。