Bachorz Rafał A, Rak Janusz, Gutowski Maciej
Department of Chemistry, University of Gdańsk, 80-952 Gdańsk, Poland.
Phys Chem Chem Phys. 2005 May 21;7(10):2116-25. doi: 10.1039/b503745j.
We characterized valence-type and dipole-bound anionic states of uracil using various electronic structure methods. We found that the most stable anion is related to neither the canonical 2,4-dioxo nor a rare imino-hydroxy tautomer. Instead, it is related to an imino-oxo tautomer, in which the N1H proton is transferred to the C5 atom. This valence anion is characterized by an electron vertical detachment energy (VDE) of 1267 meV and it is adiabatically stable with respect to the canonical neutral by 3.93 kcal mol(-1). It is also more stable by 2.32 and 5.10 kcal mol(-1) than the dipole-bound and valence anion, respectively, of the canonical tautomer. The VDE values for the former and the latter are 73 and 506 meV, respectively. Another, anionic, low-lying imino-oxo tautomer with a VDE of 2499 meV has a proton transferred from N3H to C5. It is less stable than the neutral canonical tautomer by 1.38 kcal mol(-1). The mechanism of formation of anionic tautomers with the carbon C5 protonated may involve intermolecular proton transfer or dissociative electron attachment to the canonical neutral tautomer followed by a barrier-free attachment of a hydrogen atom to C5. The six-member ring structure of anionic tautomers with carbon atoms protonated might be unstable upon an excess electron detachment. Indeed, the neutral systems resulting from electron detachment from anionic tautomers with carbon atoms protonated evolve along barrier-free decomposition pathways to a linear or a bicyclo structure, which might be viewed as lesions to RNA. Within the PCM hydration model, the low-lying valence anions become adiabatically bound with respect to the canonical neutral and the two most stable tautomers have carbon atoms protonated.
我们使用各种电子结构方法对尿嘧啶的价态型和偶极束缚阴离子态进行了表征。我们发现,最稳定的阴离子既与标准的2,4 - 二氧代互变异构体无关,也与罕见的亚氨基 - 羟基互变异构体无关。相反,它与一种亚氨基 - 氧代互变异构体有关,其中N1H质子转移到了C5原子上。这种价态阴离子的特征在于电子垂直脱附能(VDE)为1267毫电子伏特,相对于标准中性体而言,它绝热稳定3.93千卡/摩尔(-1)。与标准互变异构体的偶极束缚阴离子和价态阴离子相比,它分别还稳定2.32千卡/摩尔和5.10千卡/摩尔。前者和后者的VDE值分别为73毫电子伏特和506毫电子伏特。另一种VDE为2499毫电子伏特的低能阴离子亚氨基 - 氧代互变异构体有一个质子从N3H转移到了C5。它比中性标准互变异构体不稳定1.38千卡/摩尔(-1)。碳C5质子化的阴离子互变异构体的形成机制可能涉及分子间质子转移或对标准中性互变异构体的离解电子附着,随后氢原子无势垒地附着到C5上。碳原子质子化的阴离子互变异构体的六元环结构在过量电子脱附时可能不稳定。实际上,碳原子质子化的阴离子互变异构体电子脱附产生的中性体系会沿着无势垒分解途径演变为线性或双环结构,这可能被视为RNA的损伤。在PCM水合模型中,低能价态阴离子相对于标准中性体绝热结合,并且两个最稳定的互变异构体有碳原子质子化。