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生物医学复杂系统建模的趋势。

Trends in modeling Biomedical Complex Systems.

机构信息

Institute of Biomedical Technology, National Research Council, Milan, Italy.

出版信息

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12(Suppl 12):I1. doi: 10.1186/1471-2105-10-S12-I1.

DOI:10.1186/1471-2105-10-S12-I1
PMID:19828068
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2762057/
Abstract

In this paper we provide an introduction to the techniques for multi-scale complex biological systems, from the single bio-molecule to the cell, combining theoretical modeling, experiments, informatics tools and technologies suitable for biological and biomedical research, which are becoming increasingly multidisciplinary, multidimensional and information-driven. The most important concepts on mathematical modeling methodologies and statistical inference, bioinformatics and standards tools to investigate complex biomedical systems are discussed and the prominent literature useful to both the practitioner and the theoretician are presented.

摘要

本文从单个生物分子到细胞,为多尺度复杂生物系统的技术提供了介绍,结合了适用于生物和生物医学研究的理论建模、实验、信息学工具和技术,这些研究正变得越来越多学科、多维和信息驱动。讨论了用于研究复杂生物医学系统的数学建模方法和统计推断、生物信息学和标准工具的最重要概念,并呈现了对实践者和理论家都有用的突出文献。

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The gut microbiota ecology: a new opportunity for the treatment of metabolic diseases?肠道微生物群生态学:治疗代谢性疾病的新契机?
Front Biosci (Landmark Ed). 2009 Jun 1;14(13):5107-17. doi: 10.2741/3589.
2
A kernel-based integration of genome-wide data for clinical decision support.基于核的全基因组数据集成用于临床决策支持。
Genome Med. 2009 Apr 3;1(4):39. doi: 10.1186/gm39.
3
Integrating post-genomic approaches as a strategy to advance our understanding of health and disease.将后基因组学方法整合作为推进我们对健康和疾病理解的策略。
系统生物学方法用于研究热量限制和多酚对衰老过程的分子影响。
Genes Nutr. 2015 Nov;10(6):58. doi: 10.1007/s12263-015-0508-9. Epub 2015 Nov 25.
4
Integrative network-based approach identifies key genetic elements in breast invasive carcinoma.基于整合网络的方法识别乳腺浸润性癌中的关键遗传元件。
BMC Genomics. 2015;16 Suppl 5(Suppl 5):S2. doi: 10.1186/1471-2164-16-S5-S2. Epub 2015 May 26.
5
Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing.系统生物学和智能设备及先进信号处理在神经元通路中的大脑活动。
Front Genet. 2014 Aug 26;5:253. doi: 10.3389/fgene.2014.00253. eCollection 2014.
6
Differential network entropy reveals cancer system hallmarks.差异网络熵揭示癌症系统特征。
Sci Rep. 2012;2:802. doi: 10.1038/srep00802. Epub 2012 Nov 13.
7
Temperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstraction.尿路致病性大肠埃希菌菌毛电路开关的温度控制:通过自动化模型抽象的定量分析。
PLoS Comput Biol. 2010 Mar 26;6(3):e1000723. doi: 10.1371/journal.pcbi.1000723.
Genome Med. 2009 Mar 30;1(3):35. doi: 10.1186/gm35.
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A review of imaging techniques for systems biology.系统生物学成像技术综述。
BMC Syst Biol. 2008 Aug 12;2:74. doi: 10.1186/1752-0509-2-74.
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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.促进生物学和生物医学研究的连贯最低报告指南:MIBBI项目。
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