• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

大分子晶体中衍射花样与运动之间的关系。

On the relationship between diffraction patterns and motions in macromolecular crystals.

机构信息

Department of Chemistry, Yale University, New Haven, CT 06520-8107, USA.

出版信息

Structure. 2009 Oct 14;17(10):1307-15. doi: 10.1016/j.str.2009.08.015.

DOI:10.1016/j.str.2009.08.015
PMID:19836331
Abstract

The quality of many macromolecular crystal structures published recently has been enhanced through the use of new methods for treating the effects of molecular motion and disorder on diffraction patterns, among them a technique called translation, libration, screw-axis (TLS) parameterization. TLS parameterization rationalizes those effects in terms of domain-scale, rigid-body motions and, interestingly, the models for molecular motion that emerge when macromolecular diffraction data are analyzed this way often make sense biochemically. Here it is pointed out that all such models should be treated with caution until it is shown that they are consistent with the diffuse scatter produced by the crystals that provided the diffraction data from which they derive.

摘要

最近发表的许多高分子晶体结构的质量得到了提高,其方法是使用新的方法来处理分子运动和无序对衍射图谱的影响,其中一种技术称为平移、摆动、螺旋轴(TLS)参数化。TLS 参数化根据域尺度的刚体运动来合理化这些影响,有趣的是,当以这种方式分析大分子衍射数据时,出现的分子运动模型在生物化学上往往是有意义的。这里指出,在证明这些模型与提供衍射数据的晶体所产生的弥散散射一致之前,应该对所有这些模型都保持谨慎。

相似文献

1
On the relationship between diffraction patterns and motions in macromolecular crystals.大分子晶体中衍射花样与运动之间的关系。
Structure. 2009 Oct 14;17(10):1307-15. doi: 10.1016/j.str.2009.08.015.
2
A molecular viewer for the analysis of TLS rigid-body motion in macromolecules.一种用于分析大分子中TLS刚体运动的分子查看器。
Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):465-71. doi: 10.1107/S0907444905001897. Epub 2005 Mar 24.
3
Strategies for crystallization and structure determination of very large macromolecular assemblies.超大分子聚集体的结晶及结构测定策略。
Curr Opin Struct Biol. 2007 Oct;17(5):572-9. doi: 10.1016/j.sbi.2007.09.004. Epub 2007 Oct 25.
4
Microfluidic chips for the crystallization of biomacromolecules by counter-diffusion and on-chip crystal X-ray analysis.用于通过反向扩散进行生物大分子结晶及芯片上晶体X射线分析的微流控芯片。
Lab Chip. 2009 May 21;9(10):1412-21. doi: 10.1039/b819362b. Epub 2009 Mar 2.
5
Domain motions of glucosamine-6P synthase: comparison of the anisotropic displacements in the crystals and the catalytic hinge-bending rotation.氨基葡萄糖-6-磷酸合酶的结构域运动:晶体中各向异性位移与催化铰链弯曲旋转的比较
Protein Sci. 2007 Mar;16(3):485-93. doi: 10.1110/ps.062598107.
6
Simulation of X-ray frames from macromolecular crystals using a ray-tracing approach.使用光线追踪方法对大分子晶体的X射线帧进行模拟。
Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):535-42. doi: 10.1107/S0907444909010282. Epub 2009 May 15.
7
Efficient use of synchrotron radiation for macromolecular diffraction data collection.同步辐射在大分子衍射数据收集中的高效利用。
Prog Biophys Mol Biol. 2005 Oct;89(2):153-72. doi: 10.1016/j.pbiomolbio.2004.09.004.
8
Effects of a microgravity environment on the crystallization of biological macromolecules.微重力环境对生物大分子结晶的影响。
Microgravity Sci Technol. 1993 Jun;6(2):101-9.
9
Growth and disorder of macromolecular crystals: insights from atomic force microscopy and X-ray diffraction studies.大分子晶体的生长与无序:原子力显微镜和X射线衍射研究的见解
Methods. 2004 Nov;34(3):273-99. doi: 10.1016/j.ymeth.2004.03.020.
10
X-ray data collection from macromolecular crystals.从大分子晶体收集X射线数据。
Methods Mol Biol. 2007;364:63-94. doi: 10.1385/1-59745-266-1:63.

引用本文的文献

1
Processing macromolecular diffuse scattering data.处理大分子漫散射数据。
bioRxiv. 2023 Jun 6:2023.06.04.543637. doi: 10.1101/2023.06.04.543637.
2
Dependence of crystallographic atomic displacement parameters on temperature (25-150 K) for complexes of horse liver alcohol dehydrogenase.马肝醇脱氢酶复合物的晶体原子位移参数随温度(25-150 K)的依赖性。
Acta Crystallogr D Struct Biol. 2022 Oct 1;78(Pt 10):1221-1234. doi: 10.1107/S2059798322008361. Epub 2022 Sep 27.
3
Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters.
蛋白质X射线漫散射的可重复性及其在模拟原子位移参数方面的潜在用途。
Struct Dyn. 2021 Jul 8;8(4):044701. doi: 10.1063/4.0000087. eCollection 2021 Jul.
4
Diffuse X-ray scattering from correlated motions in a protein crystal.蛋白质晶体中相关运动的漫散射 X 射线。
Nat Commun. 2020 Mar 9;11(1):1271. doi: 10.1038/s41467-020-14933-6.
5
Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein.晶体蛋白分子动力学模拟中的类液体运动和刚体运动
Struct Dyn. 2019 Dec 18;6(6):064704. doi: 10.1063/1.5132692. eCollection 2019 Nov.
6
Rigid-body motion is the main source of diffuse scattering in protein crystallography.刚体运动是蛋白质晶体学中漫散射的主要来源。
IUCrJ. 2019 Feb 16;6(Pt 2):277-289. doi: 10.1107/S2052252519000927. eCollection 2019 Mar 1.
7
Intermolecular correlations are necessary to explain diffuse scattering from protein crystals.分子间相关性对于解释蛋白质晶体的漫散射是必要的。
IUCrJ. 2018 Feb 21;5(Pt 2):211-222. doi: 10.1107/S2052252518001124. eCollection 2018 Mar 1.
8
Interactions that know no boundaries.无边界的互动。
IUCrJ. 2018 Feb 26;5(Pt 2):120-121. doi: 10.1107/S2052252518002713. eCollection 2018 Mar 1.
9
Bringing diffuse X-ray scattering into focus.将漫散射 X 射线聚焦。
Curr Opin Struct Biol. 2018 Jun;50:109-116. doi: 10.1016/j.sbi.2018.01.009. Epub 2018 Feb 16.
10
Correlated Motions from Crystallography beyond Diffraction.结晶学中的关联运动超越衍射。
Acc Chem Res. 2017 Mar 21;50(3):580-583. doi: 10.1021/acs.accounts.6b00562.