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刚体运动是蛋白质晶体学中漫散射的主要来源。

Rigid-body motion is the main source of diffuse scattering in protein crystallography.

作者信息

de Klijn T, Schreurs A M M, Kroon-Batenburg L M J

机构信息

Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.

出版信息

IUCrJ. 2019 Feb 16;6(Pt 2):277-289. doi: 10.1107/S2052252519000927. eCollection 2019 Mar 1.

Abstract

The origin of diffuse X-ray scattering from protein crystals has been the subject of debate over the past three decades regarding whether it arises from correlated atomic motions within the molecule or from rigid-body disorder. Here, a supercell approach to modelling diffuse scattering is presented that uses ensembles of molecular models representing rigid-body motions as well as internal motions as obtained from ensemble refinement. This approach allows oversampling of Miller indices and comparison with equally oversampled diffuse data, thus allowing the maximum information to be extracted from experiments. It is found that most of the diffuse scattering comes from correlated motions within the unit cell, with only a minor contribution from longer-range correlated displacements. Rigid-body motions, and in particular rigid-body translations, make by far the most dominant contribution to the diffuse scattering, and internal motions give only a modest addition. This suggests that modelling biologically relevant protein dynamics from diffuse scattering may present an even larger challenge than was thought.

摘要

在过去三十年里,蛋白质晶体漫散射的起源一直是一个争论的话题,即它是源于分子内相关原子运动还是刚体无序。本文提出了一种用于模拟漫散射的超晶胞方法,该方法使用分子模型集合来表示刚体运动以及从集合精修中获得的内部运动。这种方法允许对米勒指数进行过采样,并与同样过采样的漫散射数据进行比较,从而能够从实验中提取最大信息。研究发现,大部分漫散射来自晶胞内的相关运动,只有一小部分来自长程相关位移。刚体运动,尤其是刚体平移,对漫散射的贡献最为显著,而内部运动的贡献较小。这表明,从漫散射中模拟生物学相关的蛋白质动力学可能比想象的面临更大的挑战。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf07/6400197/f8564516647c/m-06-00277-fig1.jpg

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