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基于 ITS rDNA 和肌动蛋白序列的进化推论揭示了常见地衣藻类 Asterochloris(Trebouxiophyceae,Chlorophyta)的广泛多样性。

Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta).

机构信息

Department of Botany, Faculty of Science, Charles University in Prague, Praha, Czech Republic.

出版信息

Mol Phylogenet Evol. 2010 Jan;54(1):36-46. doi: 10.1016/j.ympev.2009.09.035. Epub 2009 Oct 21.

Abstract

The genus Asterochloris is one of the most common lichen photobionts. We present a molecular investigation of 41 cultured strains, for which nuclear-encoded ITS rDNA and partial actin I sequences were determined. The loci studied revealed considerable differences in their evolutionary dynamics as well as sequence variation. As compared to ITS data, the actin sequences show much greater variation, and the phylogenies yield strong resolution and support of many internal branches. The partitioning of ITS dataset into several regions yielded better node resolution. We recognized 16 well-supported monophyletic lineages, of which one represents the type species of the genus (Asterochloris phycobiontica), and six correspond to species previously classified to the genus Trebouxia (T. erici, T. excentrica, T. glomerata, T. irregularis, T. italiana and T. magna). Only 15% of isolated photobionts considered in our study could be assigned with certainty to previously described species, emphasizing amazing cryptic variability in Asterochloris. Concurrently with the formal delimitation of the genus Asterochloris, we propose new combinations for the former Trebouxia species; furthermore, T. pyriformis is reduced to a synonym of A. glomerata. The present knowledge of global diversity of Asterochloris algae is discussed.

摘要

星珊瑚藻属是最常见的共生藻之一。我们对 41 株培养菌株进行了分子研究,测定了其核编码 ITS rDNA 和部分肌动蛋白 I 序列。所研究的基因座显示出它们在进化动态和序列变异方面存在相当大的差异。与 ITS 数据相比,肌动蛋白序列的变化更大,系统发育分析强烈支持许多内部分支。将 ITS 数据集划分为几个区域可以提高节点分辨率。我们识别出 16 个支持良好的单系谱系,其中一个代表该属的模式种(星珊瑚藻),另外 6 个对应于先前被归类为 Trebouxia 属的物种(Ericia、Excentrica、Glomerata、Irregularis、Italiana 和 Magna)。在我们的研究中,只有 15%的分离出的共生藻可以被确定为以前描述的物种,这强调了星珊瑚藻属惊人的隐性多态性。随着星珊瑚藻属的正式划分,我们提出了以前的 Trebouxia 种的新组合;此外,pyriformis 被归入星珊瑚藻属的同义词。还讨论了目前对全球星珊瑚藻属藻类多样性的认识。

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