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反应速率中的长延迟时间会增加内在波动。

Long delay times in reaction rates increase intrinsic fluctuations.

作者信息

Scott Matthew

机构信息

Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario, Canada.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Sep;80(3 Pt 1):031129. doi: 10.1103/PhysRevE.80.031129. Epub 2009 Sep 22.

Abstract

In spatially distributed cellular systems, it is often convenient to represent complicated auxiliary pathways and spatial transport by time-delayed reaction rates. Furthermore, many of the reactants appear in low numbers necessitating a probabilistic description. The coupling of delayed rates with stochastic dynamics leads to a probability conservation equation characterizing a non-Markovian process. A systematic approximation is derived that incorporates the effect of delayed rates on the characterization of molecular noise valid in the limit of long delay time. By way of a simple example, we show that delayed reaction dynamics can only increase intrinsic fluctuations about the steady state. The method is general enough to accommodate nonlinear transition rates allowing characterization of fluctuations around a delay-induced limit cycle.

摘要

在空间分布的细胞系统中,用延迟反应速率来表示复杂的辅助途径和空间传输通常很方便。此外,许多反应物数量较少,需要进行概率描述。延迟速率与随机动力学的耦合导致了一个表征非马尔可夫过程的概率守恒方程。我们推导了一种系统近似方法,该方法纳入了延迟速率对分子噪声表征的影响,这种影响在长延迟时间极限下是有效的。通过一个简单的例子,我们表明延迟反应动力学只会增加围绕稳态的内在涨落。该方法具有足够的通用性,能够适应非线性跃迁速率,从而可以表征围绕延迟诱导极限环的涨落。

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