McIntosh D B, Ribeck N, Saleh O A
Physics Department, University of California, Santa Barbara, California 93106, USA.
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 1):041803. doi: 10.1103/PhysRevE.80.041803. Epub 2009 Oct 7.
Single-molecule force-extension data are typically compared to ideal models of polymer behavior that ignore the effects of self-avoidance. Here, we demonstrate a link between single-molecule data and the scaling pictures of a real polymer. We measure a low-force elasticity regime where the extension L of chemically denatured single-stranded DNA grows as a power law with force f : L approximately f;{gamma} , with gamma approximately 0.60-0.69 . This compares favorably with the "tensile-blob" model of a self-avoiding polymer, which predicts gamma=2/3 . We show that the transition out of the low-force regime is highly salt dependent, and use the tensile-blob model to relate this effect to the salt dependence of the polymer's Kuhn length and excluded-volume parameter. We find that, contrary to the well-known Odijk-Skolnick-Fixman theory, the Kuhn length of single-stranded DNA is linearly proportional to the Debye length of the solution. Finally, we show that the low-force elasticity becomes linear (gamma=1) at approximately 3 M salt, and interpret this as a Theta point of the polymer. At this point, the force-extension data is best described by the wormlike chain model, from which we estimate the bare (nonelectrostatic) persistence length of the polymer to be approximately 0.6 nm .
单分子力-伸长数据通常与忽略自回避效应的聚合物行为理想模型进行比较。在此,我们展示了单分子数据与真实聚合物标度图像之间的联系。我们测量了一个低力弹性区域,其中化学变性的单链DNA的伸长L随力f呈幂律增长:L近似于f的γ次方,γ约为0.60 - 0.69。这与自回避聚合物的“拉伸微区”模型相当吻合,该模型预测γ = 2/3。我们表明,从低力区域的转变高度依赖于盐,并使用拉伸微区模型将这种效应与聚合物的库恩长度和排除体积参数的盐依赖性联系起来。我们发现,与著名的奥迪克-斯科尔尼克-菲克斯曼理论相反,单链DNA的库恩长度与溶液的德拜长度呈线性比例关系。最后,我们表明在约3 M盐浓度下低力弹性变为线性(γ = 1),并将此解释为聚合物的θ点。在这一点上,力-伸长数据最好用蠕虫状链模型来描述,从中我们估计聚合物的裸(非静电)持久长度约为0.6 nm。