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定量单分子力-延伸实验中的筛选离子过剩。

Quantifying screening ion excesses in single-molecule force-extension experiments.

机构信息

Materials Department, University of California, Santa Barbara, California 93106, USA.

出版信息

Phys Rev Lett. 2012 Jul 27;109(4):048301. doi: 10.1103/PhysRevLett.109.048301. Epub 2012 Jul 23.

DOI:10.1103/PhysRevLett.109.048301
PMID:23006113
Abstract

We derive a thermodynamic identity that allows one to infer the change in the number of screening ions that are associated with a charged macromolecule as the macromolecule is continuously stretched. Applying this identity to force-extension data on both single-stranded and double-stranded DNA, we find that the number of polymer-associated ions depends nontrivially on both the bulk salt concentration and the bare rigidity of the polymer, with single-stranded DNA exhibiting a relatively large decrease in ion excess upon stretching. We rationalize these observations using simple models for polyelectrolyte extension.

摘要

我们推导出一个热力学恒等式,可以根据该恒等式推断当大分子连续拉伸时,与带电大分子相关的屏蔽离子数量的变化。将该恒等式应用于单链和双链 DNA 的力-伸长数据,我们发现与聚合物相关的离子数量不仅取决于本体盐浓度,还取决于聚合物的裸刚性,单链 DNA 在拉伸时离子过剩量相对较大。我们使用聚电解质拉伸的简单模型来解释这些观察结果。

相似文献

1
Quantifying screening ion excesses in single-molecule force-extension experiments.定量单分子力-延伸实验中的筛选离子过剩。
Phys Rev Lett. 2012 Jul 27;109(4):048301. doi: 10.1103/PhysRevLett.109.048301. Epub 2012 Jul 23.
2
Application of the Poisson Boltzmann polyelectrolyte model for analysis of equilibria between single-, double-, and triple-stranded polynucleotides in the presence of K(+), Na(+), and Mg(2+) ions.泊松-玻尔兹曼聚电解质模型在分析存在钾离子、钠离子和镁离子时单链、双链和三链多核苷酸之间平衡中的应用。
J Biomol Struct Dyn. 2002 Oct;20(2):275-90. doi: 10.1080/07391102.2002.10506843.
3
Detailed scaling analysis of low-force polyelectrolyte elasticity.低力聚电解质弹性的详细标度分析
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 1):041803. doi: 10.1103/PhysRevE.80.041803. Epub 2009 Oct 7.
4
Stretching single stranded DNA, a model polyelectrolyte.拉伸单链DNA,一种典型的聚电解质。
Phys Rev Lett. 2002 Dec 9;89(24):248102. doi: 10.1103/PhysRevLett.89.248102. Epub 2002 Nov 22.
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Responsive polymer gels: double-stranded versus single-stranded DNA.响应性聚合物凝胶:双链DNA与单链DNA
J Phys Chem B. 2007 Sep 20;111(37):10886-96. doi: 10.1021/jp0713108. Epub 2007 Aug 30.
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Denaturation transition of stretched DNA.拉伸DNA的变性转变
Phys Rev Lett. 2008 Jan 11;100(1):018106. doi: 10.1103/PhysRevLett.100.018106. Epub 2008 Jan 9.
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Quantifying the ion atmosphere of unfolded, single-stranded nucleic acids using equilibrium dialysis and single-molecule methods.使用平衡透析和单分子方法对未折叠的单链核酸的离子氛进行定量分析。
Nucleic Acids Res. 2016 May 5;44(8):3763-71. doi: 10.1093/nar/gkw196. Epub 2016 Apr 1.
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Nonlinear low-force elasticity of single-stranded DNA molecules.单链DNA分子的非线性低力弹性
Phys Rev Lett. 2009 Feb 13;102(6):068301. doi: 10.1103/PhysRevLett.102.068301. Epub 2009 Feb 11.
9
On the origin of the unusual behavior in the stretching of single-stranded DNA.关于单链 DNA 拉伸中异常行为的起源。
J Chem Phys. 2012 Jun 21;136(23):235103. doi: 10.1063/1.4729371.
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Application of the Poisson Boltzmann polyelectrolyte model for analysis of thermal denaturation of DNA in the presence of Na+ and polyamine cations.泊松-玻尔兹曼聚电解质模型在分析存在Na⁺和多胺阳离子时DNA热变性中的应用。
Biophys Chem. 2003 May 1;104(1):55-66. doi: 10.1016/s0301-4622(02)00338-1.

引用本文的文献

1
Single-stranded nucleic acid elasticity arises from internal electrostatic tension.单链核酸的弹性源于内部静电张力。
Proc Natl Acad Sci U S A. 2017 May 16;114(20):5095-5100. doi: 10.1073/pnas.1701132114. Epub 2017 May 1.
2
Counting the ions surrounding nucleic acids.计算核酸周围的离子。
Nucleic Acids Res. 2017 Feb 28;45(4):1596-1605. doi: 10.1093/nar/gkw1305.
3
Quantifying the ion atmosphere of unfolded, single-stranded nucleic acids using equilibrium dialysis and single-molecule methods.使用平衡透析和单分子方法对未折叠的单链核酸的离子氛进行定量分析。
Nucleic Acids Res. 2016 May 5;44(8):3763-71. doi: 10.1093/nar/gkw196. Epub 2016 Apr 1.
4
The snakelike chain character of unstructured RNA.无规则 RNA 的蛇形链特征。
Biophys J. 2013 Dec 3;105(11):2569-76. doi: 10.1016/j.bpj.2013.10.019.