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最小化热力学长度以选择用于自由能计算和副本交换模拟的中间状态。

Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations.

作者信息

Shenfeld Daniel K, Xu Huafeng, Eastwood Michael P, Dror Ron O, Shaw David E

机构信息

D E Shaw Research, New York, New York 10036, USA.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 2):046705. doi: 10.1103/PhysRevE.80.046705. Epub 2009 Oct 19.

DOI:10.1103/PhysRevE.80.046705
PMID:19905480
Abstract

In computational thermodynamics, a sequence of intermediate states is commonly introduced to connect two equilibrium states. We consider two cases where the choice of intermediate states is particularly important: minimizing statistical error in free-energy difference calculations and maximizing average acceptance probabilities in replica-exchange simulations. We derive bounds for these quantities in terms of the thermodynamic distance between the intermediates, and show that in both cases the intermediates should be chosen as equidistant points along a geodesic connecting the end states.

摘要

在计算热力学中,通常引入一系列中间态来连接两个平衡态。我们考虑两种中间态选择尤为重要的情况:在自由能差计算中最小化统计误差以及在副本交换模拟中最大化平均接受概率。我们根据中间态之间的热力学距离推导出这些量的界限,并表明在这两种情况下,中间态都应沿着连接终态的测地线选为等距点。

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