Lyubimov Artem Y, Chen Lin, Sampson Nicole S, Vrielink Alice
Department of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, Sinsheimer Laboratories, Santa Cruz, CA 95064, USA.
Acta Crystallogr D Biol Crystallogr. 2009 Nov;65(Pt 11):1222-31. doi: 10.1107/S0907444909037421. Epub 2009 Oct 22.
Cholesterol oxidase is a flavoenzyme that catalyzes the oxidation and isomerization of 3beta-hydroxysteroids. Structural and mutagenesis studies have shown that Asn485 plays a key role in substrate oxidation. The side chain makes an NH...pi interaction with the reduced form of the flavin cofactor. A N485D mutant was constructed to further test the role of the amide group in catalysis. The mutation resulted in a 1800-fold drop in the overall k(cat). Atomic resolution structures were determined for both the N485L and N485D mutants. The structure of the N485D mutant enzyme (at 1.0 A resolution) reveals significant perturbations in the active site. As predicted, Asp485 is oriented away from the flavin moiety, such that any stabilizing interaction with the reduced flavin is abolished. Met122 and Glu361 form unusual hydrogen bonds to the functional group of Asp485 and are displaced from the positions they occupy in the wild-type active site. The overall effect is to disrupt the stabilization of the reduced FAD cofactor during catalysis. Furthermore, a narrow transient channel that is shown to form when the wild-type Asn485 forms the NH...pi interaction with FAD and that has been proposed to function as an access route of molecular oxygen, is not observed in either of the mutant structures, suggesting that the dynamics of the active site are altered.
胆固醇氧化酶是一种黄素酶,可催化3β - 羟基类固醇的氧化和异构化。结构和诱变研究表明,Asn485在底物氧化中起关键作用。其侧链与黄素辅因子的还原形式形成NH...π相互作用。构建了N485D突变体以进一步测试酰胺基团在催化中的作用。该突变导致总体催化常数k(cat)下降了1800倍。测定了N485L和N485D突变体的原子分辨率结构。N485D突变体酶的结构(分辨率为1.0 Å)显示活性位点有明显扰动。如预测的那样,Asp485的方向远离黄素部分,因此与还原型黄素的任何稳定相互作用都被消除。Met122和Glu361与Asp485的官能团形成异常氢键,并从它们在野生型活性位点所占据的位置发生位移。总体效果是破坏催化过程中还原型FAD辅因子的稳定性。此外,在两种突变体结构中均未观察到野生型Asn485与FAD形成NH...π相互作用时形成的狭窄瞬态通道,该通道被认为是分子氧的进入途径,这表明活性位点的动力学发生了改变。