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DNA C 环是端粒的替代延长活动的特异性和可量化的标志物。

DNA C-circles are specific and quantifiable markers of alternative-lengthening-of-telomeres activity.

机构信息

Children's Medical Research Institute, University of Sydney, New South Wales, Australia.

出版信息

Nat Biotechnol. 2009 Dec;27(12):1181-5. doi: 10.1038/nbt.1587.

DOI:10.1038/nbt.1587
PMID:19935656
Abstract

Alternative lengthening of telomeres (ALT) is likely to be an important target for anticancer treatment as approximately 10% of cancers depend on this telomere maintenance mechanism for continued growth, and inhibition of ALT can cause cellular senescence. However, no ALT inhibitors have been developed for therapeutic use because of the lack of a suitable ALT activity assay and of known ALT-specific target molecules. Here we show that partially single-stranded telomeric (CCCTAA)(n) DNA circles (C-circles) are ALT specific. We provide an assay that is rapidly and linearly responsive to ALT activity and that is suitable for screening for ALT inhibitors. We detect C-circles in blood from ALT(+) osteosarcoma patients, suggesting that the C-circle assay (CC assay) may have clinical utility for diagnosis and management of ALT(+) tumors.

摘要

端粒的替代性延长(ALT)可能是癌症治疗的一个重要靶点,因为大约 10%的癌症依赖这种端粒维持机制来持续生长,而抑制 ALT 会导致细胞衰老。然而,由于缺乏合适的 ALT 活性测定方法和已知的 ALT 特异性靶分子,尚未开发出用于治疗用途的 ALT 抑制剂。在这里,我们证明部分单链端粒(CCCTAA)(n)DNA 环(C 环)是 ALT 特异性的。我们提供了一种快速且线性响应 ALT 活性的测定方法,适用于筛选 ALT 抑制剂。我们在 ALT(+)骨肉瘤患者的血液中检测到 C 环,这表明 C 环测定(CC 测定)可能具有用于 ALT(+)肿瘤的诊断和管理的临床应用价值。

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DNA C-circles are specific and quantifiable markers of alternative-lengthening-of-telomeres activity.DNA C 环是端粒的替代延长活动的特异性和可量化的标志物。
Nat Biotechnol. 2009 Dec;27(12):1181-5. doi: 10.1038/nbt.1587.
2
The C-Circle Assay for alternative-lengthening-of-telomeres activity.用于端粒替代延长活性的C环检测法。
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G-quadruplex Stabilization Fuels the ALT Pathway in ALT-positive Osteosarcoma Cells.四链体稳定促进 ALT 阳性骨肉瘤细胞中的 ALT 通路。
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PUMA-induced apoptosis drives bone marrow failure and genomic instability in telomerase-deficient mice.PUMA诱导的细胞凋亡导致端粒酶缺陷小鼠的骨髓衰竭和基因组不稳定。
Cell Death Differ. 2025 Aug 19. doi: 10.1038/s41418-025-01557-w.
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Distinct mechanisms underlying extrachromosomal telomere DNA generation in ALT cancers.端粒酶替代途径(ALT)癌症中染色体外端粒DNA生成的独特机制。
Nucleic Acids Res. 2025 Aug 11;53(15). doi: 10.1093/nar/gkaf771.
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Cellular adaptations impact the biological activity of naphthalene diimide G-quadruplex ligands in ALT-positive osteosarcoma cells.

本文引用的文献

1
Control of telomere length by a trimming mechanism that involves generation of t-circles.通过一种涉及t环生成的修剪机制来控制端粒长度。
EMBO J. 2009 Apr 8;28(7):799-809. doi: 10.1038/emboj.2009.42. Epub 2009 Feb 12.
2
Unusual telomeric DNAs in human telomerase-negative immortalized cells.人端粒酶阴性永生化细胞中的异常端粒DNA。
Mol Cell Biol. 2009 Feb;29(3):703-13. doi: 10.1128/MCB.00603-08. Epub 2008 Nov 17.
3
Quantitative telomeric overhang determination using a double-strand specific nuclease.使用双链特异性核酸酶进行端粒悬垂定量测定。
细胞适应性影响萘二亚胺G-四链体配体在端粒酶替代途径(ALT)阳性骨肉瘤细胞中的生物学活性。
Cell Death Dis. 2025 Aug 1;16(1):581. doi: 10.1038/s41419-025-07908-2.
4
Conserved and unique features of terminal telomeric sequences in ALT-positive cancer cells.端粒酶替代途径(ALT)阳性癌细胞中端粒末端序列的保守和独特特征。
Elife. 2025 Aug 1;14:RP106657. doi: 10.7554/eLife.106657.
5
Telomere interactions and structural variants in ALT cells revealed with TelSPRITE.利用TelSPRITE揭示的端粒相互作用和ALT细胞中的结构变异。
bioRxiv. 2024 Nov 22:2024.11.22.624895. doi: 10.1101/2024.11.22.624895.
6
Non-canonical functions of DNMT3A in hematopoietic stem cells regulate telomerase activity and genome integrity.DNMT3A在造血干细胞中的非经典功能调节端粒酶活性和基因组完整性。
Cell Stem Cell. 2025 Jul 10. doi: 10.1016/j.stem.2025.06.010.
7
TRF1 relies on fork reversal to prevent fragility at human telomeres.TRF1依靠叉形逆转来防止人类端粒的脆弱性。
Nat Commun. 2025 Jul 11;16(1):6439. doi: 10.1038/s41467-025-61828-5.
8
Exceptional response to the ATR inhibitor, camonsertib, in a patient with ALT+ metastatic melanoma.一名ALT+转移性黑色素瘤患者对ATR抑制剂卡蒙西替布有显著反应。
NPJ Precis Oncol. 2025 Jul 7;9(1):227. doi: 10.1038/s41698-025-01025-1.
9
Extrachromosomal circular DNA drives dynamic genome plasticity: emerging roles in disease progression and clinical potential.染色体外环状DNA驱动动态基因组可塑性:在疾病进展中的新作用及临床潜力
Theranostics. 2025 May 25;15(13):6387-6411. doi: 10.7150/thno.111765. eCollection 2025.
10
Targeting FANCM using the antisense oligonucleotides to treat the ALT-positive cancers.使用反义寡核苷酸靶向FANCM以治疗端粒延长替代途径(ALT)阳性癌症。
Mol Ther Nucleic Acids. 2025 May 23;36(2):102558. doi: 10.1016/j.omtn.2025.102558. eCollection 2025 Jun 10.
Nucleic Acids Res. 2008 Feb;36(3):e14. doi: 10.1093/nar/gkm1063. Epub 2007 Dec 10.
4
Replication protein A prevents accumulation of single-stranded telomeric DNA in cells that use alternative lengthening of telomeres.复制蛋白A可防止采用端粒替代延长机制的细胞中积累单链端粒DNA。
Nucleic Acids Res. 2007;35(21):7267-78. doi: 10.1093/nar/gkm738. Epub 2007 Oct 24.
5
Ku suppresses formation of telomeric circles and alternative telomere lengthening in Arabidopsis.Ku抑制拟南芥中染色体末端环的形成和端粒的替代延长。
Mol Cell. 2007 Jul 6;27(1):163-9. doi: 10.1016/j.molcel.2007.05.025.
6
The SMC5/6 complex maintains telomere length in ALT cancer cells through SUMOylation of telomere-binding proteins.SMC5/6复合物通过端粒结合蛋白的SUMO化修饰维持端粒酶阳性癌细胞中的端粒长度。
Nat Struct Mol Biol. 2007 Jul;14(7):581-90. doi: 10.1038/nsmb1259. Epub 2007 Jun 24.
7
Circulating nucleic acids in plasma/serum.血浆/血清中的循环核酸。
Pathology. 2007 Apr;39(2):197-207. doi: 10.1080/00313020701230831.
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A human cell line that maintains telomeres in the absence of telomerase and of key markers of ALT.一种在缺乏端粒酶和ALT关键标志物的情况下维持端粒的人类细胞系。
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Telomerase-independent telomere length maintenance in the absence of alternative lengthening of telomeres-associated promyelocytic leukemia bodies.在缺乏与端粒延长相关的早幼粒细胞白血病小体的替代延长的情况下,不依赖端粒酶的端粒长度维持。
Cancer Res. 2005 Apr 1;65(7):2722-9. doi: 10.1158/0008-5472.CAN-04-2881.
10
Suppression of alternative lengthening of telomeres by Sp100-mediated sequestration of the MRE11/RAD50/NBS1 complex.通过Sp100介导的MRE11/RAD50/NBS1复合物隔离来抑制端粒的替代延长。
Mol Cell Biol. 2005 Apr;25(7):2708-21. doi: 10.1128/MCB.25.7.2708-2721.2005.