基因集富集分析为乳腺癌干细胞中的新信号通路提供了深入了解。
Gene set enrichment analysis provides insight into novel signalling pathways in breast cancer stem cells.
机构信息
Division of Systems Biomedical Technology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
出版信息
Br J Cancer. 2010 Jan 5;102(1):206-12. doi: 10.1038/sj.bjc.6605468. Epub 2009 Dec 8.
BACKGROUND
Tumour-initiating cells (TICs) or cancer stem cells can exist as a small population in malignant tissues. The signalling pathways activated in TICs that contribute to tumourigenesis are not fully understood.
METHODS
Several breast cancer cell lines were sorted with CD24 and CD44, known markers for enrichment of breast cancer TICs. Tumourigenesis was analysed using sorted cells and total RNA was subjected to gene expression profiling and gene set enrichment analysis (GSEA).
RESULTS
We showed that several breast cancer cell lines have a small population of CD24(-/low)/CD44(+) cells in which TICs may be enriched, and confirmed the properties of TICs in a xenograft model. GSEA revealed that CD24(-/low)/CD44(+) cell populations are enriched for genes involved in transforming growth factor-beta, tumour necrosis factor, and interferon response pathways. Moreover, we found the presence of nuclear factor-kappaB (NF-kappaB) activity in CD24(-/low)/CD44(+) cells, which was previously unrecognised. In addition, NF-kappaB inhibitor dehydroxymethylepoxyquinomicin (DHMEQ) prevented tumourigenesis of CD24(-/low)/CD44(+) cells in vivo.
CONCLUSION
Our findings suggest that signalling pathways identified using GSEA help to identify molecular targets and biomarkers for TIC-like cells.
背景
肿瘤起始细胞(TICs)或癌症干细胞可以作为恶性组织中的一小部分存在。在 TICs 中激活的促进肿瘤发生的信号通路尚未完全了解。
方法
使用已知的乳腺癌 TIC 富集标志物 CD24 和 CD44 对几种乳腺癌细胞系进行分选。通过分选细胞分析肿瘤发生情况,并对总 RNA 进行基因表达谱分析和基因集富集分析(GSEA)。
结果
我们表明,几种乳腺癌细胞系中存在一小部分 CD24(-/low)/CD44(+)细胞,其中可能富集了 TICs,并在异种移植模型中证实了 TICs 的特性。GSEA 显示 CD24(-/low)/CD44(+)细胞群体富集了转化生长因子-β、肿瘤坏死因子和干扰素反应途径相关的基因。此外,我们发现 NF-κB 活性存在于 CD24(-/low)/CD44(+)细胞中,这是以前未被识别的。此外,NF-κB 抑制剂去甲氧基环氧喹啉(DHMEQ)可防止体内 CD24(-/low)/CD44(+)细胞的肿瘤发生。
结论
我们的研究结果表明,使用 GSEA 鉴定的信号通路有助于鉴定 TIC 样细胞的分子靶标和生物标志物。
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