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土壤淀粉降解菌Dyadobacter soli sp. nov. 的分离与鉴定

Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil.

机构信息

Research and Development Division, H-Plus Eco Ltd, BVC 301, KRIBB, Eoeun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea.

School of Civil and Environmental Engineering, Yonsei University, Seoul 120-749, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2010 Nov;60(Pt 11):2577-2582. doi: 10.1099/ijs.0.019653-0. Epub 2009 Dec 11.

Abstract

A Gram-negative, non-motile, aerobic bacterial strain, designated MJ20(T), was isolated from farm soil near Daejeon (South Korea) and was characterized taxonomically by using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain MJ20(T) belongs to the family Cytophagaceae, class Sphingobacteria, and was related most closely to Dyadobacter fermentans DSM 18053(T) (98.9 % sequence similarity), Dyadobacter beijingensis JCM 14200(T) (98.0 %) and Dyadobacter ginsengisoli KCTC 12589(T) (96.4 %). The G+C content of the genomic DNA of strain MJ20(T) was 48.5 mol%. The detection of MK-7 as the predominant menaquinone and a fatty acid profile with summed feature 4 (C(16 : 1)ω7c and/or iso-C(15 : 0) 2-OH), iso-C(15 : 0), C(16 : 0) and C(16 : 1)ω5c as major components supported the affiliation of strain MJ20(T) to the genus Dyadobacter. The new isolate exhibited relatively low levels of DNA-DNA relatedness with respect to D. fermentans DSM 18053(T) (mean±SD of three determinations, 47±7 %) and D. beijingensis JCM 14200(T) (38±8 %). On the basis of its phenotypic and genotypic properties together with phylogenetic distinctiveness, strain MJ20(T) (=KCTC 22481(T) =JCM 16232(T)) should be classified in the genus Dyadobacter as the type strain of a novel species, for which the name Dyadobacter soli sp. nov. is proposed.

摘要

一株革兰氏阴性、非运动性、需氧细菌菌株,被命名为 MJ20(T),从大田(韩国)附近的农田土壤中分离出来,并通过多相分类法进行了分类学描述。比较 16S rRNA 基因序列分析表明,菌株 MJ20(T)属于噬细胞菌科,鞘脂杆菌纲,与 Dyadobacter fermentans DSM 18053(T)(98.9%序列相似性)、Dyadobacter beijingensis JCM 14200(T)(98.0%)和 Dyadobacter ginsengisoli KCTC 12589(T)(96.4%)最为密切相关。菌株 MJ20(T)的基因组 DNA G+C 含量为 48.5mol%。MK-7 作为主要的menaquinone 和脂肪酸图谱(特征 4 总和:C(16:1)ω7c 和/或 iso-C(15:0)2-OH、iso-C(15:0)、C(16:0)和 C(16:1)ω5c)的检测结果支持菌株 MJ20(T)属于 Dyadobacter 属。新分离株与 D. fermentans DSM 18053(T)(三个测定值的平均值±SD,47±7%)和 D. beijingensis JCM 14200(T)(38±8%)的 DNA-DNA 同源性水平相对较低。基于其表型和基因型特性以及系统发育上的独特性,菌株 MJ20(T)(=KCTC 22481(T)=JCM 16232(T))应归类于 Dyadobacter 属,为一个新种的模式菌株,建议将其命名为 Dyadobacter soli sp. nov.。

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