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通过直接PCR从人毛发根部进行单管基因分型。

Single-tube genotyping from a human hair root by direct PCR.

作者信息

Hayashida Mariko, Iwao-Koizumi Kyoko, Murata Shigenori, Kinoshita Kenji

机构信息

School of Pharmaceutical Sciences, Mukogawa Women's University, Koshien, Nishinomiya 663-8179, Japan.

出版信息

Anal Sci. 2009 Dec;25(12):1487-9. doi: 10.2116/analsci.25.1487.

DOI:10.2116/analsci.25.1487
PMID:20009340
Abstract

We have developed a simple, labor-saving, inexpensive and rapid SNP genotyping method that directly uses a human hair root as the template. This single-tube genotyping method was used to successfully and reliably genotype the ADH1B and ALDH2 polymorphisms using a hair root (without DNA isolation) and the polymerase chain reaction (PCR) enzyme kit KOD FX. Since the DNA extraction step was eliminated, the possibility of sample contamination was considerably decreased. The single-tube SNP genotyping was performed by coupling the PCR enzyme kit with allele-specific primer (ASP)-PCR. In the post-genome era, a simple and inexpensive method for diagnostic analysis is in high demand, and this PCR method with a hair root as a template will be very useful for genetic diagnoses in biological and medical laboratories.

摘要

我们开发了一种简单、省力、廉价且快速的单核苷酸多态性(SNP)基因分型方法,该方法直接将人类发根用作模板。这种单管基因分型方法利用发根(无需进行DNA分离)和聚合酶链反应(PCR)酶试剂盒KOD FX,成功且可靠地对乙醇脱氢酶1B(ADH1B)和乙醛脱氢酶2(ALDH2)基因多态性进行了基因分型。由于省去了DNA提取步骤,样本污染的可能性大幅降低。单管SNP基因分型通过将PCR酶试剂盒与等位基因特异性引物(ASP)-PCR相结合来进行。在后基因组时代,对简单且廉价的诊断分析方法需求很高,这种以发根为模板的PCR方法在生物和医学实验室的基因诊断中将非常有用。

相似文献

1
Single-tube genotyping from a human hair root by direct PCR.通过直接PCR从人毛发根部进行单管基因分型。
Anal Sci. 2009 Dec;25(12):1487-9. doi: 10.2116/analsci.25.1487.
2
Genotyping of polymorphisms in alcohol and aldehyde dehydrogenase genes by direct application of PCR-RFLP on dried blood without DNA extraction.通过直接应用PCR-RFLP技术对干血样进行酒精和乙醛脱氢酶基因多态性基因分型,无需提取DNA。
Anal Sci. 2010;26(4):503-5. doi: 10.2116/analsci.26.503.
3
Duplex PCR-RFLP for the Simultaneous Genotyping of Single Nucleotide Polymorphisms in ADH1B and ALDH2 Genes.用于同时对乙醇脱氢酶1B(ADH1B)基因和乙醛脱氢酶2(ALDH2)基因中的单核苷酸多态性进行基因分型的双重聚合酶链反应-限制性片段长度多态性分析
Anal Sci. 2016;32(12):1363-1366. doi: 10.2116/analsci.32.1363.
4
Genetic polymorphisms of ADH1B, ADH1C and ALDH2 in Turkish alcoholics: lack of association with alcoholism and alcoholic cirrhosis.土耳其酗酒者中ADH1B、ADH1C和ALDH2的基因多态性:与酒精中毒和酒精性肝硬化无关联
Bosn J Basic Med Sci. 2015 May 17;15(2):37-41. doi: 10.17305/bjbms.2015.242.
5
Duplex polymerase chain reaction with confronting two-pair primers (PCR-CTPP) for genotyping alcohol dehydrogenase beta subunit (ADH2) and aldehyde dehydrogenase 2 (ALDH2).用于酒精脱氢酶β亚基(ADH2)和乙醛脱氢酶2(ALDH2)基因分型的双引物对双重聚合酶链反应(PCR-CTPP)
Alcohol Alcohol. 2003 Sep-Oct;38(5):407-10. doi: 10.1093/alcalc/agg096.
6
Rapid simultaneous genotyping of polymorphisms in ADH1B and ALDH2 using high resolution melting assay.使用高分辨率熔解分析法对乙醇脱氢酶1B(ADH1B)和乙醛脱氢酶2(ALDH2)基因多态性进行快速同步基因分型。
Clin Chem Lab Med. 2013 May;51(5):e75-7. doi: 10.1515/cclm-2012-0509.
7
An idea to explore: Determination of single nucleotide polymorphisms in alcohol metabolism-related genes using PCR-based assays to understand the link between an individual's genotype and phenotype.一个值得探索的想法:使用基于 PCR 的检测方法来确定酒精代谢相关基因中的单核苷酸多态性,以了解个体基因型和表型之间的联系。
Biochem Mol Biol Educ. 2024 Jan-Feb;52(1):117-126. doi: 10.1002/bmb.21794. Epub 2023 Oct 10.
8
Direct detection of single nucleotide polymorphism (SNP) by the TaqMan PCR assay using dried saliva on water-soluble paper and hair-roots, without DNA extraction.使用水溶性纸上的干唾液和发根,通过TaqMan PCR测定法直接检测单核苷酸多态性(SNP),无需提取DNA。
Anal Sci. 2014;30(3):427-9. doi: 10.2116/analsci.30.427.
9
[Verification and Validation on Single Nucleotide Polymorphism Analysis of Alcohol Metabolism-Related Genes ADH1B and ALDH2, Using Dried-Saliva Samples].[使用干唾液样本对酒精代谢相关基因ADH1B和ALDH2的单核苷酸多态性分析进行验证和确认]
Rinsho Byori. 2015 Nov;63(11):1253-8.
10
Simultaneous genotyping of alcohol dehydrogenase 2 (ADH2) and aldehyde dehydrogenase 2 (ALDH2) loci by amplified product length polymorphism (APLP) analysis.通过扩增产物长度多态性(APLP)分析对乙醇脱氢酶2(ADH2)和乙醛脱氢酶2(ALDH2)基因座进行同步基因分型。
Electrophoresis. 1998 May;19(5):659-60. doi: 10.1002/elps.1150190508.

引用本文的文献

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A direct isothermal amplification system adapted for rapid SNP genotyping of multifarious sample types.一种适用于多种样本类型的快速 SNP 基因分型的直接等温扩增系统。
Biosens Bioelectron. 2018 Sep 15;115:70-76. doi: 10.1016/j.bios.2018.05.021. Epub 2018 May 11.
2
Universal direct PCR amplification system: a time- and cost-effective tool for high-throughput applications.通用直接PCR扩增系统:一种用于高通量应用的省时且经济高效的工具。
3 Biotech. 2017 Aug;7(4):246. doi: 10.1007/s13205-017-0890-7. Epub 2017 Jul 15.