Department of Biology & Health Services, Edinboro University of Pennsylvania, Edinboro, Pennsylvania 16444, Edinboro, Pennsylvania 16444, USA.
Protist. 2010 Apr;161(2):237-49. doi: 10.1016/j.protis.2009.10.003.
In this study five different molecular markers were used to: (1) infer the phylogeographic differentiation of Thalassiosira weissflogii in the Atlantic and Pacific Oceans; and (2) address the biological species status of the inferred geographic lineages. The results of the ribosomal RNA data analyses suggested that the Hawaiian isolate evolved first after which the Indonesian and the Atlantic/California strains diverged. In contrast, the tree derived from the partial sexually induced gene 1 (Sig1) data exhibited an initial divergence between the Eastern Atlantic/Western Atlantic/California and the Hawaiian/Indonesian groups after which the latter evolved into the Hawaiian and Indonesian lineages. The partial beta-tubulin phylogeny discerns an early "split" between an Eastern Atlantic/Western Atlantic clade and an Indonesia/California/Hawaii group which later differentiated into distinct Hawaiian and Indonesian/California "branches". The number of compensatory base changes (CBCs) in the ITS2 indicated that the "Atlantic group", including the California isolate, constituted a single reproductive unit and that the Indonesian and Hawaiian T. weissflogii are two different biological species with regard to each other and to the "Atlantic clade". The beta-tubulin tree contradicts the reproductive units recovered by the compensatory base change analysis due to the close affinity of the California and Indonesia strains whereas the sexually induced gene 1 phylogeny supports the existence of three biological species, despite exhibiting a temporal sequence of geographic diversification that is different from that seen in topologies derived from the ribosomal RNA data. It is hypothesized that the tree derived from the sexually induced gene 1 reflects the relative order of the evolution of reproductive isolation in the different T. weissflogii strains while the lineages in the other phylogenies depict time elapsed since common ancestry. The current investigation is the first to have shown concordance in the pattern of variation between a reasonably good biological species marker (CBCs in the ITS2) and a protein hypothesized to be involved in sperm-egg recognition/adhesion in diatoms (Sig1). It was further discussed that the Pacific/Indonesian T. weissflogii species complex most likely evolved in the presence of gene flow and "local" environmental selection. Three hypotheses which potentially can explain the genetic diversification/similarity between the Atlantic T. weissflogii samples and the isolate obtained off the coast of California were proposed and discussed.
在这项研究中,使用了五个不同的分子标记来:(1)推断大西洋和太平洋中威氏海链藻的系统地理分化;(2)解决推断的地理谱系的生物种状态。核糖体 RNA 数据分析的结果表明,夏威夷分离株首先进化,然后印度尼西亚和大西洋/加利福尼亚株系分化。相比之下,从部分性诱导基因 1(Sig1)数据得出的树显示,东大西洋/西大西洋/加利福尼亚和夏威夷/印度尼西亚组之间最初存在分歧,之后后者进化为夏威夷和印度尼西亚谱系。部分β-微管蛋白系统发育区分了东大西洋/西大西洋群和印度尼西亚/加利福尼亚/夏威夷群之间的早期“分裂”,后者后来分化为不同的夏威夷和印度尼西亚/加利福尼亚“分支”。ITS2 中的补偿碱基变化(CBC)数量表明,包括加利福尼亚分离株在内的“大西洋群”构成了一个单一的繁殖单位,并且印度尼西亚和夏威夷威氏海链藻彼此以及与“大西洋群”是两个不同的生物种。β-微管蛋白树与补偿碱基变化分析中恢复的繁殖单位相矛盾,因为加利福尼亚和印度尼西亚菌株之间的亲缘关系密切,而性诱导基因 1 系统发育支持存在三个生物种,尽管它们表现出的地理多样化时间序列与从核糖体 RNA 数据得出的拓扑结构不同。假设从性诱导基因 1 得出的树反映了不同威氏海链藻菌株中生殖隔离进化的相对顺序,而其他系统发育中的谱系则描绘了自共同祖先以来的时间流逝。目前的研究首次表明,在相当好的生物种标记(ITS2 中的 CBC)和假设参与硅藻精子-卵识别/粘附的蛋白质(Sig1)之间的变异模式存在一致性。进一步讨论了太平洋/印度尼西亚威氏海链藻物种复合体很可能在基因流动和“局部”环境选择的存在下进化。提出并讨论了三个可能解释大西洋威氏海链藻样本和加利福尼亚沿海获得的分离株之间遗传多样化/相似性的假设。