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基于 SARS 3CL(pro)工程设计一种新型的内肽酶。

Engineering a novel endopeptidase based on SARS 3CL(pro).

机构信息

Institute of Biological Chemistry, Academia Sinica and Core Facility of Recombinant Protein Production, Taipei, Taiwan.

出版信息

Biotechniques. 2009 Dec;47(6):1029-32. doi: 10.2144/000113303.

DOI:10.2144/000113303
PMID:20041855
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7081961/
Abstract

A 3C-like protease (3CLpro) from the severe acute respiratory syndrome-coronavirus (SARS-CoV) is required for viral replication, cleaving the replicase polyproteins at 11 sites with the conserved Gln [downward arrow](Ser, Ala, Gly) sequences. In this study, we developed a mutant 3CLpro (T25G) with an expanded S1' space that demonstrates 43.5-fold better k(cat)/K(m) compared with wild-type in cleaving substrates with a larger Met at P1' and is suitable for tag removal from recombinant fusion proteins. Two vectors for expressing fusion proteins with the T25G recognition site (Ala-Val-Leu-Gln [downward arrow]Met) in Escherichia coli and yeast were constructed. Identical cloning sites were used in these vectors for parallel cloning. PstI was chosen as a 5' cloning site because it overlapped the nucleotide sequence encoding the protease site and avoided addition of extra amino acids at the N terminus of recombinant proteins. 3CL(pro) (T25G) was found to have a 3-fold improvement over TEV(pro) in tag cleavage at each respective preferred cleavage site.

摘要

一种来自严重急性呼吸系统综合征冠状病毒(SARS-CoV)的 3C 样蛋白酶(3CLpro)对于病毒复制是必需的,它可以在 11 个位点切割复制酶多蛋白,其保守的 Gln[↓](Ser、Ala、Gly)序列。在这项研究中,我们开发了一种突变的 3CLpro(T25G),其 S1'空间扩大,与野生型相比,在切割 P1'位带有更大 Met 的底物时,k(cat)/K(m)提高了 43.5 倍,并且适合从重组融合蛋白中去除标签。构建了两个用于在大肠杆菌和酵母中表达带有 T25G 识别位点(Ala-Val-Leu-Gln[↓]Met)的融合蛋白的载体。这些载体使用相同的克隆位点进行平行克隆。选择 PstI 作为 5'克隆位点,因为它与编码蛋白酶位点的核苷酸序列重叠,并且避免在重组蛋白的 N 末端添加额外的氨基酸。在各自的首选切割位点,3CL(pro)(T25G)在标签切割方面比 TEV(pro)提高了 3 倍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8a/7081961/180e204b118d/btn-47-1029-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8a/7081961/d06ee2c69fc4/btn-47-1029-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8a/7081961/9b3808cf2f23/btn-47-1029-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8a/7081961/180e204b118d/btn-47-1029-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8a/7081961/d06ee2c69fc4/btn-47-1029-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8a/7081961/9b3808cf2f23/btn-47-1029-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8a/7081961/180e204b118d/btn-47-1029-g3.jpg

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本文引用的文献

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Biotechnol Prog. 2009 Nov-Dec;25(6):1582-6. doi: 10.1002/btpr.274.
2
Crystal structures of the starch-binding domain from Rhizopus oryzae glucoamylase reveal a polysaccharide-binding path.米根霉葡糖淀粉酶淀粉结合结构域的晶体结构揭示了一条多糖结合途径。
Biochem J. 2008 Nov 15;416(1):27-36. doi: 10.1042/BJ20080580.
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Production of authentic SARS-CoV M(pro) with enhanced activity: application as a novel tag-cleavage endopeptidase for protein overproduction.
具有增强活性的 authentic SARS-CoV M(pro) 的生产:作为用于蛋白质过量生产的新型标签切割内肽酶的应用。
J Mol Biol. 2007 Feb 23;366(3):965-75. doi: 10.1016/j.jmb.2006.11.073. Epub 2006 Dec 1.
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Characterization and inhibition of SARS-coronavirus main protease.严重急性呼吸综合征冠状病毒主要蛋白酶的特性及抑制作用
Curr Top Med Chem. 2006;6(4):361-76. doi: 10.2174/156802606776287090.
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Mechanism of the maturation process of SARS-CoV 3CL protease.严重急性呼吸综合征冠状病毒3C样蛋白酶成熟过程的机制
J Biol Chem. 2005 Sep 2;280(35):31257-66. doi: 10.1074/jbc.M502577200. Epub 2005 Mar 23.
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Coot: model-building tools for molecular graphics.Coot:分子图形的模型构建工具。
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. doi: 10.1107/S0907444904019158. Epub 2004 Nov 26.
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Characterization of SARS main protease and inhibitor assay using a fluorogenic substrate.利用荧光底物对严重急性呼吸综合征主要蛋白酶进行表征及抑制剂检测
Biochem Biophys Res Commun. 2004 Jun 11;318(4):862-7. doi: 10.1016/j.bbrc.2004.04.098.
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Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13190-5. doi: 10.1073/pnas.1835675100. Epub 2003 Oct 29.
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J Gen Virol. 2003 Sep;84(Pt 9):2305-2315. doi: 10.1099/vir.0.19424-0.
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