文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

根据 2H 自旋弛豫率的直接测量估算蛋白质中酰胺氘核的四极耦合。

Estimating quadrupole couplings of amide deuterons in proteins from direct measurements of 2H spin relaxation rates.

机构信息

Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA.

出版信息

J Magn Reson. 2010 Apr;203(2):316-22. doi: 10.1016/j.jmr.2009.12.020. Epub 2009 Dec 24.


DOI:10.1016/j.jmr.2009.12.020
PMID:20053572
Abstract

The measurements of longitudinal and transverse 2H spin relaxation rates of backbone amide deuterons (D(N)) in the [U-13C,15N]-labeled protein ubiquitin show that the utility of amide deuterons as probes of backbone order in proteins is compromised by substantial variability of D(N) quadrupolar coupling constants (QCC) from one amide site to another. However, using the dynamics parameters of 15N-2H bond vectors evaluated from 15N relaxation data, site-specific QCC values can be estimated directly from D(N)R1 and R2 rates providing useful information on hydrogen bonding in proteins. In agreement with previous indirect scalar relaxation-based measurements, the D(N) QCC values estimated directly from R1 and R2 2H relaxation rates correlate with the inverse cube of the X-ray structure-derived hydrogen bond distances in ubiquitin: QCC=(232+/-2.3)+(118+/-17) summation operator(i)(cosalpha)r(i)(-3) where r is the inter-nuclear hydrogen bond distance in ångströms, and alpha is the N-D....O(i) angle.

摘要

对 [U-13C,15N]-标记的蛋白质泛素中酰胺氘核(D(N))的纵向和横向 2H 自旋弛豫率的测量表明,酰胺氘核作为蛋白质中骨架有序性探针的用途受到酰胺位点之间的 D(N) 四极偶合常数(QCC)的显著变化的影响。然而,使用从 15N 弛豫数据评估的 15N-2H 键矢量的动力学参数,可以直接从 D(N)R1 和 R2 速率估算出特定于位点的 QCC 值,为蛋白质中的氢键提供有用的信息。与先前基于间接标量弛豫的测量结果一致,直接从 R1 和 R2 2H 弛豫速率估算出的 D(N)QCC 值与来自 X 射线结构的氢键距离的倒数的立方成正比:QCC=(232+/-2.3)+(118+/-17)∑(i)(cosalpha)r(i)(-3) 其中 r 是 Ångströms 中的核间氢键距离,alpha 是 N-D....O(i) 角。

相似文献

[1]
Estimating quadrupole couplings of amide deuterons in proteins from direct measurements of 2H spin relaxation rates.

J Magn Reson. 2009-12-24

[2]
Variation in quadrupole couplings of alpha deuterons in ubiquitin suggests the presence of C(alpha)-H(alpha)...O=C hydrogen bonds.

J Am Chem Soc. 2010-6-9

[3]
Solution NMR characterization of hydrogen bonds in a protein by indirect measurement of deuterium quadrupole couplings.

J Magn Reson. 1997-7

[4]
Indirect use of deuterium in solution NMR studies of protein structure and hydrogen bonding.

Prog Nucl Magn Reson Spectrosc. 2013-8-28

[5]
A new spin probe of protein dynamics: nitrogen relaxation in 15N-2H amide groups.

J Am Chem Soc. 2005-3-9

[6]
Detection and classification of hyperfine-shifted 1H, 2H, and 15N resonances of the Rieske ferredoxin component of toluene 4-monooxygenase.

Biochemistry. 1999-1-12

[7]
Hydrogen exchange and protein hydration: the deuteron spin relaxation dispersions of bovine pancreatic trypsin inhibitor and ubiquitin.

J Mol Biol. 1995-2-3

[8]
Deuterium spin probes of backbone order in proteins: 2H NMR relaxation study of deuterated carbon alpha sites.

J Am Chem Soc. 2009-11-4

[9]
The quadrupole enhanced 1H spin-lattice relaxation of the amide proton in slow tumbling proteins.

Phys Chem Chem Phys. 2010-2-10

[10]
Accurate determination of order parameters from 1H,15N dipolar couplings in MAS solid-state NMR experiments.

J Am Chem Soc. 2009-10-7

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索