Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA.
J Magn Reson. 2010 Apr;203(2):316-22. doi: 10.1016/j.jmr.2009.12.020. Epub 2009 Dec 24.
The measurements of longitudinal and transverse 2H spin relaxation rates of backbone amide deuterons (D(N)) in the [U-13C,15N]-labeled protein ubiquitin show that the utility of amide deuterons as probes of backbone order in proteins is compromised by substantial variability of D(N) quadrupolar coupling constants (QCC) from one amide site to another. However, using the dynamics parameters of 15N-2H bond vectors evaluated from 15N relaxation data, site-specific QCC values can be estimated directly from D(N)R1 and R2 rates providing useful information on hydrogen bonding in proteins. In agreement with previous indirect scalar relaxation-based measurements, the D(N) QCC values estimated directly from R1 and R2 2H relaxation rates correlate with the inverse cube of the X-ray structure-derived hydrogen bond distances in ubiquitin: QCC=(232+/-2.3)+(118+/-17) summation operator(i)(cosalpha)r(i)(-3) where r is the inter-nuclear hydrogen bond distance in ångströms, and alpha is the N-D....O(i) angle.
对 [U-13C,15N]-标记的蛋白质泛素中酰胺氘核(D(N))的纵向和横向 2H 自旋弛豫率的测量表明,酰胺氘核作为蛋白质中骨架有序性探针的用途受到酰胺位点之间的 D(N) 四极偶合常数(QCC)的显著变化的影响。然而,使用从 15N 弛豫数据评估的 15N-2H 键矢量的动力学参数,可以直接从 D(N)R1 和 R2 速率估算出特定于位点的 QCC 值,为蛋白质中的氢键提供有用的信息。与先前基于间接标量弛豫的测量结果一致,直接从 R1 和 R2 2H 弛豫速率估算出的 D(N)QCC 值与来自 X 射线结构的氢键距离的倒数的立方成正比:QCC=(232+/-2.3)+(118+/-17)∑(i)(cosalpha)r(i)(-3) 其中 r 是 Ångströms 中的核间氢键距离,alpha 是 N-D....O(i) 角。
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