• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

氢交换与蛋白质水合作用:牛胰蛋白酶抑制剂和泛素的氘核自旋弛豫色散

Hydrogen exchange and protein hydration: the deuteron spin relaxation dispersions of bovine pancreatic trypsin inhibitor and ubiquitin.

作者信息

Denisov V P, Halle B

机构信息

Chemical Center, Lund University, Sweden.

出版信息

J Mol Biol. 1995 Feb 3;245(5):698-709. doi: 10.1006/jmbi.1994.0056.

DOI:10.1006/jmbi.1994.0056
PMID:7531249
Abstract

Water deuteron (2H) spin relaxation was used to study hydrogen exchange, hydration, and protein dynamics in aqueous solutions of the globular proteins bovine pancreatic trypsin inhibitor (BPTI) and ubiquitin. The frequency dispersion of the longitudinal 2H relaxation rate was measured in the pD range 2 to 11 at 27 degrees C. In contrast to the previously reported water 17O relaxation dispersion from the same samples, the 2H dispersion depends strongly on pD. This pD dependence is due to labile protein deuterons in acidic side-chains and surface peptide groups, which exchange rapidly with water deuterons. The pD dependence of the 2H relaxation in BPTI solutions could be quantitatively accounted for in terms of known pK values and hydrogen exchange rate constants. For ubiquitin, labile protein deuterons contribute importantly to the 2H relaxation dispersion even in the neutral pD range. The 2H relaxation data also provided information about the orientational order and internal motion of OD and ND bonds in side-chains and surface peptides. A comparison of the water contribution to the 2H dispersion with the 17O dispersion indicates that one of the four internal water molecules of BPTI, presumably the deeply buried water molecule W122, exchanges more slowly (10(-6) to 10(-4) second) than the other three (10(-8) to 10(-6) second).

摘要

利用水氘核(2H)自旋弛豫来研究球状蛋白牛胰蛋白酶抑制剂(BPTI)和泛素的水溶液中的氢交换、水合作用及蛋白质动力学。在27℃下,于pD范围2至11内测量纵向2H弛豫速率的频率色散。与之前报道的相同样品的水17O弛豫色散不同,2H色散强烈依赖于pD。这种对pD的依赖性源于酸性侧链和表面肽基团中不稳定的蛋白质氘核,它们与水氘核快速交换。BPTI溶液中2H弛豫的pD依赖性可以根据已知的pK值和氢交换速率常数进行定量解释。对于泛素,即使在中性pD范围内,不稳定的蛋白质氘核对2H弛豫色散也有重要贡献。2H弛豫数据还提供了有关侧链和表面肽中OD和ND键的取向有序性和内部运动的信息。将水对2H色散的贡献与17O色散进行比较表明,BPTI的四个内部水分子之一,可能是深埋的水分子W122,交换速度比其他三个水分子(10^(-8)至10^(-6)秒)慢(10^(-6)至10^(-4)秒)。

相似文献

1
Hydrogen exchange and protein hydration: the deuteron spin relaxation dispersions of bovine pancreatic trypsin inhibitor and ubiquitin.氢交换与蛋白质水合作用:牛胰蛋白酶抑制剂和泛素的氘核自旋弛豫色散
J Mol Biol. 1995 Feb 3;245(5):698-709. doi: 10.1006/jmbi.1994.0056.
2
Protein hydration dynamics in aqueous solution: a comparison of bovine pancreatic trypsin inhibitor and ubiquitin by oxygen-17 spin relaxation dispersion.水溶液中的蛋白质水合动力学:通过氧-17自旋弛豫色散对牛胰蛋白酶抑制剂和泛素的比较。
J Mol Biol. 1995 Feb 3;245(5):682-97. doi: 10.1006/jmbi.1994.0055.
3
Nanosecond to microsecond protein dynamics probed by magnetic relaxation dispersion of buried water molecules.通过埋藏水分子的磁弛豫色散探测纳秒至微秒级蛋白质动力学。
J Am Chem Soc. 2008 Feb 6;130(5):1774-87. doi: 10.1021/ja0775873. Epub 2008 Jan 10.
4
Thermal denaturation of ribonuclease A characterized by water 17O and 2H magnetic relaxation dispersion.以水的17O和2H磁弛豫色散为特征的核糖核酸酶A的热变性
Biochemistry. 1998 Jun 30;37(26):9595-604. doi: 10.1021/bi980442b.
5
Hydrogen exchange and hydration dynamics in gelatin gels.明胶凝胶中的氢交换与水合动力学
J Phys Chem B. 2006 Nov 2;110(43):21551-9. doi: 10.1021/jp057567s.
6
Dynamics of protein and peptide hydration.蛋白质和肽的水合动力学。
J Am Chem Soc. 2004 Jan 14;126(1):102-14. doi: 10.1021/ja038325d.
7
Accelerated exchange of a buried water molecule in selectively disulfide-reduced bovine pancreatic trypsin inhibitor.选择性二硫键还原的牛胰蛋白酶抑制剂中埋藏水分子的加速交换
Biochemistry. 2004 Sep 28;43(38):12020-7. doi: 10.1021/bi0492049.
8
Residence times of the buried water molecules in bovine pancreatic trypsin inhibitor and its G36S mutant.牛胰蛋白酶抑制剂及其G36S突变体中埋藏水分子的停留时间。
Biochemistry. 1995 Jul 18;34(28):9046-51. doi: 10.1021/bi00028a013.
9
Hydrogen exchange rates in proteins from water (1)H transverse magnetic relaxation.蛋白质中氢从水的交换速率(1)H横向磁弛豫。
J Am Chem Soc. 2002 Sep 4;124(35):10264-5. doi: 10.1021/ja027101c.
10
Model-free analysis of stretched relaxation dispersions.
J Magn Reson. 1998 Nov;135(1):1-13. doi: 10.1006/jmre.1998.1534.

引用本文的文献

1
NMR techniques in studying water in biotechnological systems.核磁共振技术在生物技术系统水研究中的应用
Biophys Rev. 2020 Jun;12(3):683-701. doi: 10.1007/s12551-020-00694-5. Epub 2020 Jun 15.
2
Compact NMR relaxometry of human blood and blood components.人体血液及血液成分的紧凑型核磁共振弛豫测量法。
Trends Analyt Chem. 2016 Nov;83(A):53-64. doi: 10.1016/j.trac.2016.04.020.
3
Internal water and microsecond dynamics in myoglobin.肌红蛋白的内水和微秒动力学。
J Phys Chem B. 2013 Nov 27;117(47):14676-87. doi: 10.1021/jp409234g. Epub 2013 Nov 19.
4
Investigations of peptide hydration using NMR and molecular dynamics simulations: A study of effects of water on the conformation and dynamics of antamanide.使用 NMR 和分子动力学模拟研究肽的水合作用:水对安他密定构象和动力学影响的研究。
J Biomol NMR. 1996 Dec;8(4):453-76. doi: 10.1007/BF00228147.
5
The physical state of water in bacterial spores.细菌芽孢中水的物理状态。
Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19334-9. doi: 10.1073/pnas.0908712106. Epub 2009 Nov 5.
6
Cell water dynamics on multiple time scales.多时间尺度上的细胞水动力学
Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6266-71. doi: 10.1073/pnas.0709585105. Epub 2008 Apr 24.
7
Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups.对含有埋藏极性或可电离基团的工程蛋白内部空腔水合作用的晶体学研究。
Biophys J. 2008 Apr 15;94(8):3208-16. doi: 10.1529/biophysj.107.122473. Epub 2008 Jan 4.
8
Water molecules and hydrogen-bonded networks in bacteriorhodopsin--molecular dynamics simulations of the ground state and the M-intermediate.细菌视紫红质中的水分子和氢键网络——基态和M中间体的分子动力学模拟
Biophys J. 2005 May;88(5):3252-61. doi: 10.1529/biophysj.104.047993. Epub 2005 Feb 24.
9
Stabilization of internal charges in a protein: water penetration or conformational change?蛋白质内部电荷的稳定:水的渗透还是构象变化?
Biophys J. 2004 Dec;87(6):3982-94. doi: 10.1529/biophysj.104.048454. Epub 2004 Sep 17.
10
Water and urea interactions with the native and unfolded forms of a beta-barrel protein.水和尿素与β-桶状蛋白的天然态和去折叠态的相互作用。
Protein Sci. 2003 Dec;12(12):2768-81. doi: 10.1110/ps.03262603.