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一种针对双聚类问题的自底向上方法。

A bottom-up approach to the biclustering-problem.

作者信息

Koh Hyung-Won, Hildebrand Lars

机构信息

ISAS - Institute for Analytical Sciences, Dortmund, Germany.

出版信息

Int J Comput Biol Drug Des. 2008;1(2):158-73. doi: 10.1504/ijcbdd.2008.020207.

Abstract

The biclustering problem adresses the discovery of locally significant correlation within a data matrix and has recently become quite popular in the field of microarray data analysis. The preservation of a particularly defined degree of homogeneity between elements within a bicluster plays a key role in the search procedure. This work proposes a pairwise distance function related to the mean squared residue to introduce multiple enrichment algorithms. Based on a theoretical framework, the impact is demonstrated empirically by the enrichment of commonly available and also on artificially generated bicluster sets.

摘要

双聚类问题旨在发现数据矩阵中局部显著的相关性,并且最近在微阵列数据分析领域变得相当流行。双聚类中元素之间特定定义的同质性程度的保持在搜索过程中起着关键作用。这项工作提出了一种与均方残差相关的成对距离函数,以引入多种富集算法。基于一个理论框架,通过对常用的以及人工生成的双聚类集的富集,从经验上证明了其影响。

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