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Toward the dynamic interactome: it's about time.
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Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
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Interactome: gateway into systems biology.
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Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.
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Enhancing the role of veterinary vaccines reducing zoonotic diseases of humans: linking systems biology with vaccine development.
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Biological Network Inference and analysis using SEBINI and CABIN.
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EXCESP: A Structure-Based Online Database for Extracellular Interactome of Cell Surface Proteins in Humans.
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Interaction networks: from protein functions to drug discovery. A review.
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DyNDG: Identifying Leukemia-related Genes Based on Time-series Dynamic Network by Integrating Differential Genes.
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Computational Approaches to Predict Protein-Protein Interactions in Crowded Cellular Environments.
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Sequential stacking link prediction algorithms for temporal networks.
Nat Commun. 2024 Feb 14;15(1):1364. doi: 10.1038/s41467-024-45598-0.
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AAAKB: A manually curated database for tracking and predicting genes of Abdominal aortic aneurysm (AAA).
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Inferring cell cycle phases from a partially temporal network of protein interactions.
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The New Field of Network Physiology: Building the Human Physiolome.
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Interactomics in plant defence: progress and opportunities.
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Temporal networks in biology and medicine: a survey on models, algorithms, and tools.
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本文引用的文献

1
Evaluating between-pathway models with expression data.
J Comput Biol. 2010 Mar;17(3):477-87. doi: 10.1089/cmb.2009.0178.
5
Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks.
Semin Cell Dev Biol. 2009 Sep;20(7):863-8. doi: 10.1016/j.semcdb.2009.08.004. Epub 2009 Aug 12.
6
Understanding modularity in molecular networks requires dynamics.
Sci Signal. 2009 Jul 28;2(81):pe44. doi: 10.1126/scisignal.281pe44.
7
A dynamic network of transcription in LPS-treated human subjects.
BMC Syst Biol. 2009 Jul 28;3:78. doi: 10.1186/1752-0509-3-78.
9
Recovering time-varying networks of dependencies in social and biological studies.
Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):11878-83. doi: 10.1073/pnas.0901910106. Epub 2009 Jul 1.
10
BowTieBuilder: modeling signal transduction pathways.
BMC Syst Biol. 2009 Jun 30;3:67. doi: 10.1186/1752-0509-3-67.

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