• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

绘制原生生物“稀有生物圈”图谱。

Mapping the protistan 'rare biosphere'.

作者信息

Dawson Scott C, Hagen Kari D

机构信息

Department of Microbiology, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.

出版信息

J Biol. 2009;8(12):105. doi: 10.1186/jbiol201.

DOI:10.1186/jbiol201
PMID:20067591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2804278/
Abstract

The use of cultivation-independent approaches to map microbial diversity, including recent work published in BMC Biology, has now shown that protists, like bacteria/archaea, are much more diverse than had been realized. Uncovering eukaryotic diversity may now be limited not by access to samples or cost but rather by the availability of full-length reference sequence data.

摘要

使用不依赖培养的方法来绘制微生物多样性图谱,包括发表在《BMC生物学》上的近期研究,现已表明,与细菌/古菌一样,原生生物的多样性比人们此前认识到的要丰富得多。如今,揭示真核生物多样性可能不再受样本获取或成本的限制,而是受全长参考序列数据可用性的限制。

相似文献

1
Mapping the protistan 'rare biosphere'.绘制原生生物“稀有生物圈”图谱。
J Biol. 2009;8(12):105. doi: 10.1186/jbiol201.
2
A molecular view of microbial diversity and the biosphere.微生物多样性与生物圈的分子视角。
Science. 1997 May 2;276(5313):734-40. doi: 10.1126/science.276.5313.734.
3
Diverse microbial communities inhabit Antarctic sponges.多样的微生物群落栖息于南极海绵中。
Environ Microbiol. 2004 Mar;6(3):288-300. doi: 10.1111/j.1462-2920.2004.00570.x.
4
Are We Overestimating Protistan Diversity in Nature?我们是否高估了自然界中原生动物的多样性?
Trends Microbiol. 2019 Mar;27(3):197-205. doi: 10.1016/j.tim.2018.10.009. Epub 2018 Nov 16.
5
Are Archaea inherently less diverse than Bacteria in the same environments?在相同环境中,古生菌在本质上是否比细菌的多样性更低?
FEMS Microbiol Ecol. 2008 Jul;65(1):74-87. doi: 10.1111/j.1574-6941.2008.00498.x. Epub 2008 May 8.
6
Molecular microbial ecology: land of the one-eyed king.分子微生物生态学:独眼国王的领地。
Curr Opin Microbiol. 2004 Jun;7(3):210-20. doi: 10.1016/j.mib.2004.04.015.
7
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.大规模平行标签测序揭示了海洋厌氧原生生物群落的复杂性。
BMC Biol. 2009 Nov 3;7:72. doi: 10.1186/1741-7007-7-72.
8
Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain.西班牙蒙内格罗沙漠盐浅湖中的微生物生物多样性。
FEMS Microbiol Ecol. 2013 Sep;85(3):503-18. doi: 10.1111/1574-6941.12139. Epub 2013 May 20.
9
Biogeography. Is everything everywhere?生物地理学。万物皆无处不在吗?
Science. 2005 Nov 11;310(5750):960-1. doi: 10.1126/science.310.5750.960.
10
Microbial population structures in the deep marine biosphere.深海生物圈中的微生物种群结构。
Science. 2007 Oct 5;318(5847):97-100. doi: 10.1126/science.1146689.

引用本文的文献

1
Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing.通过高通量测序探索挪威斯卡格拉克海峡中触鼻藻的季节多样性和动态变化。
Mol Ecol. 2015 Jun;24(12):3026-42. doi: 10.1111/mec.13160. Epub 2015 Apr 20.
2
High diversity of protistan plankton communities in remote high mountain lakes in the European Alps and the Himalayan mountains.欧洲阿尔卑斯山和喜马拉雅山偏远高山湖泊中原生浮游生物群落的高度多样性。
FEMS Microbiol Ecol. 2015 Apr;91(4). doi: 10.1093/femsec/fiv010. Epub 2015 Jan 27.
3
Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes.从全球普查中探究微生物真核生物多样性:18S rRNA基因焦磷酸测序标签与全长序列比较的见解
Appl Environ Microbiol. 2014 Jul;80(14):4363-73. doi: 10.1128/AEM.00057-14. Epub 2014 May 9.
4
A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology.从高山湖泊中的纤毛虫浮游生物进行形态发生调查,明确了在微生物生态学中使用特定谱系条码标记的必要性。
Environ Microbiol. 2014 Feb;16(2):430-44. doi: 10.1111/1462-2920.12194. Epub 2013 Jul 15.
5
Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity.通过大规模平行测序获得的 SSU rRNA 基因的系统发育归属:对淡水原生生物多样性的新认识。
PLoS One. 2013;8(3):e58950. doi: 10.1371/journal.pone.0058950. Epub 2013 Mar 14.
6
Unveiling trophic functions of uncultured protist taxa by incubation experiments in the brackish Baltic Sea.通过在微咸的波罗的海中进行培养实验,揭示未培养原生生物分类群的营养功能。
PLoS One. 2012;7(7):e41970. doi: 10.1371/journal.pone.0041970. Epub 2012 Jul 30.
7
Microplanktonic community structure in a coastal system relative to a Phaeocystis bloom inferred from morphological and tag pyrosequencing methods.从形态学和标签 pyrosequencing 方法推断沿海系统中微浮游生物群落结构与甲藻水华的关系。
PLoS One. 2012;7(6):e39924. doi: 10.1371/journal.pone.0039924. Epub 2012 Jun 29.
8
Uncultivated microbial eukaryotic diversity: a method to link ssu rRNA gene sequences with morphology.未培养的微生物真核生物多样性:一种将 ssu rRNA 基因序列与形态学联系起来的方法。
PLoS One. 2011;6(12):e28158. doi: 10.1371/journal.pone.0028158. Epub 2011 Dec 8.
9
jMOTU and Taxonerator: turning DNA Barcode sequences into annotated operational taxonomic units.jMOTU 和 Taxonerator:将 DNA 条形码序列转化为带注释的分类操作单元。
PLoS One. 2011 Apr 25;6(4):e19259. doi: 10.1371/journal.pone.0019259.

本文引用的文献

1
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.大规模平行标签测序揭示了海洋厌氧原生生物群落的复杂性。
BMC Biol. 2009 Nov 3;7:72. doi: 10.1186/1741-7007-7-72.
2
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.稀有生物界的褶皱:焦磷酸测序错误可能导致多样性估计的人为膨胀。
Environ Microbiol. 2010 Jan;12(1):118-23. doi: 10.1111/j.1462-2920.2009.02051.x. Epub 2009 Aug 27.
3
Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.为微生物-真核生物生态学定义基于DNA的操作分类单元。
Appl Environ Microbiol. 2009 Sep;75(18):5797-808. doi: 10.1128/AEM.00298-09. Epub 2009 Jul 10.
4
Protists are microbes too: a perspective.原生生物也是微生物:一种观点。
ISME J. 2009 Jan;3(1):4-12. doi: 10.1038/ismej.2008.101. Epub 2008 Nov 13.
5
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.SILVA:一个全面的在线资源,提供经质量检查且与ARB兼容的比对核糖体RNA序列数据。
Nucleic Acids Res. 2007;35(21):7188-96. doi: 10.1093/nar/gkm864. Epub 2007 Oct 18.
6
Microbial diversity in the deep sea and the underexplored "rare biosphere".深海中的微生物多样性以及未被充分探索的“稀有生物圈”。
Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):12115-20. doi: 10.1073/pnas.0605127103. Epub 2006 Jul 31.
7
Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway).超硫化缺氧峡湾(挪威弗拉姆瓦伦)中沿氧气/硫化氢梯度的微型真核生物群落模式。
Appl Environ Microbiol. 2006 May;72(5):3626-36. doi: 10.1128/AEM.72.5.3626-3636.2006.
8
Mechanisms underlying the evolution and maintenance of functionally heterogeneous 18S rRNA genes in Apicomplexans.顶复门生物中功能异质的18S rRNA基因的进化与维持的潜在机制。
Mol Biol Evol. 2004 Sep;21(9):1704-11. doi: 10.1093/molbev/msh178. Epub 2004 Jun 2.
9
Novel kingdom-level eukaryotic diversity in anoxic environments.缺氧环境中全新的界级真核生物多样性。
Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8324-9. doi: 10.1073/pnas.062169599.
10
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology.用于微生物学中确定性、系统发育和环境研究的全细胞荧光寡核苷酸探针检测
J Bacteriol. 1990 Feb;172(2):762-70. doi: 10.1128/jb.172.2.762-770.1990.