Department of Electrical and Computer Engineering, Purdue University Calumet, Hammond, IN 46323-2094, USA.
Comput Methods Programs Biomed. 2010 Jul;99(1):66-74. doi: 10.1016/j.cmpb.2009.12.007. Epub 2010 Jan 18.
Chromosome analysis is a basic science with medical implication. Karyotyping is a procedure to study an individual's chromosome make-up. It is time consuming to train students and clinical technologists to recognize patterns of G-banded chromosomes because of the dynamic nature of G-band resolutions in different metaphase spreads. High resolution G-bands are desirable because they provide detailed information for structural analysis. However, it is challenging to identify chromosomes at higher resolution levels even for many cytogenetics technologists. In response to the need for training students to identify human chromosomes at variable G-band resolutions, we present in this paper an advanced version of virtual reality (VR)-based interactive karyotyping program capable of manipulating G-band resolutions for human cytogenetics education. The program can generate different metaphase spreads ranging from short and well separate chromosomes at low G-band resolutions to long, curved, and overlapped chromosomes at high G-band resolutions. Other features include a scoring system, helping strategies, and the progress reports. The traditional "cut and paste" karyotyping method for chromosome separation is incorporated in the software. This method is compared with the "simple clicking" method which is based on an edge detection technique for outlining each chromosome. The comprehensive program is suitable for in-depth training of advanced students.
染色体分析是一门具有医学意义的基础科学。核型分析是一种研究个体染色体构成的方法。由于不同中期分裂相中 G 带分辨率的动态性质,培训学生和临床技术人员识别 G 带染色体模式需要花费大量时间。高分辨率 G 带是理想的,因为它们为结构分析提供了详细的信息。然而,即使对于许多细胞遗传学技术人员来说,识别更高分辨率水平的染色体也是具有挑战性的。为了满足培训学生在不同 G 带分辨率下识别人类染色体的需求,我们在本文中提出了一种基于虚拟现实 (VR) 的交互式核型分析程序的高级版本,该程序能够操作为人类细胞遗传学教育的 G 带分辨率。该程序可以生成不同的中期分裂相,从低 G 带分辨率下的短而分离良好的染色体到高 G 带分辨率下的长、弯曲和重叠的染色体。其他功能包括评分系统、帮助策略和进度报告。传统的染色体分离“剪切和粘贴”核型分析方法被纳入软件中。该方法与基于边缘检测技术的“简单点击”方法进行了比较,该方法用于勾勒出每条染色体的轮廓。综合程序适合于高级学生的深入培训。