Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1432 As, Norway.
Arch Biochem Biophys. 2010 Apr 1;496(1):61-8. doi: 10.1016/j.abb.2010.01.011. Epub 2010 Feb 1.
Three barley xyloglucan endotransglycosylases (HvXETs), known as xyloglucan xyloglucosyl transferases (EC 2.4.1.207), were subjected to kinetic and computational docking studies. The k(cat) x K(m)(-1) values with the reduced [3H]-labelled XXXG, XXLG/XLXG and XLLG acceptor substrates were 0.02 x 10(-2), 0.1 x 10(-2) and 3.2 x 10(-2) s(-1) microM(-1), while the K(m) constants were 10.6, 8.6 and 5.3 mM, obtained for HvXET3, HvXET4 and HvXET6, respectively. Docking of XLLG in acceptor-binding regions revealed that at least two conformational states were likely to participate in all isoforms. The assessments of kinetic and computational data indicated that the disposition of aromatic residues at the entrance to the active sites and the flexibility of proximal COOH-terminal loops could orient acceptors more or less favourably during binding, thus leading to tighter or weaker K(m) constants. The data suggested that binding of acceptors in HvXETs is guided by contributions from the conserved residues in the active sites and by the of neighbouring loops.
对三种大麦木葡聚糖内转糖基酶(HvXETs),即木葡聚糖木葡糖基转移酶(EC 2.4.1.207),进行了动力学和计算对接研究。用还原的 [3H]-标记的 XXXG、XXLG/XLXG 和 XLLG 受体底物的 k(cat) x K(m)(-1) 值分别为 0.02 x 10(-2)、0.1 x 10(-2) 和 3.2 x 10(-2) s(-1) microM(-1),而 K(m)常数分别为 10.6、8.6 和 5.3 mM,分别对应于 HvXET3、HvXET4 和 HvXET6。XLLG 在受体结合区域的对接表明,至少有两种构象状态可能参与所有同工酶。对动力学和计算数据的评估表明,芳香族残基在活性位点入口处的位置以及邻近 COOH 末端环的灵活性,可以在结合过程中或多或少地有利于受体的取向,从而导致更紧或更弱的 K(m)常数。数据表明,受体在 HvXETs 中的结合受到活性位点保守残基和相邻环的贡献的指导。