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由Taq聚合酶合成的胞嘧啶甲基化DNA用于检测限制性内切酶HinfI的甲基化敏感性。

Cytosine methylated DNA synthesized by Taq polymerase used to assay methylation sensitivity of restriction endonuclease HinfI.

作者信息

Colasanti J, Sundaresan V

机构信息

Cold Spring Harbor Laboratory, NY 11724.

出版信息

Nucleic Acids Res. 1991 Jan 25;19(2):391-4. doi: 10.1093/nar/19.2.391.

DOI:10.1093/nar/19.2.391
PMID:2014176
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC333607/
Abstract

We have studied the resistance of cytosine methylated DNA to digestion by the restriction endonuclease HinfI, using a simple PCR procedure to synthesize DNA of known sequence in which every cytosine is methylated at the 5 position. We find that HinfI cannot digest cytosine methylated DNA at the concentrations normally used in restriction digests. Complete digestion is possible using a vast excess of enzyme; under these conditions, the rate of HinfI digestion for cytosine methylated DNA is at least 1440-fold slower than for unmethylated DNA. The presence of an additional methylated cytosine at the degenerate position internal to the recognition sequence does not appear to increase the resistance to HinfI digestion. We also tested HhaII, an isoschizomer of HinfI, and found that it is completely inactive on cytosine methylated DNA. The procedure we have used should be of general applicability in determination of the methylation sensitivities of other restiction enzymes, as well as studies of the effects of methylation on gene expression in direct DNA transfer experiments.

摘要

我们使用一种简单的聚合酶链反应(PCR)程序来合成已知序列的DNA,其中每个胞嘧啶在5位被甲基化,以此研究了胞嘧啶甲基化DNA对限制性内切酶HinfI消化的抗性。我们发现,在限制性消化通常使用的浓度下,HinfI不能消化胞嘧啶甲基化DNA。使用大量过量的酶可以实现完全消化;在这些条件下,胞嘧啶甲基化DNA的HinfI消化速率比未甲基化DNA至少慢1440倍。识别序列内部简并位置处额外的甲基化胞嘧啶的存在似乎不会增加对HinfI消化的抗性。我们还测试了HinfI的同裂酶HhaII,发现它对胞嘧啶甲基化DNA完全无活性。我们所使用的程序在确定其他限制性酶的甲基化敏感性以及直接DNA转移实验中甲基化对基因表达的影响的研究中应具有普遍适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51bd/333607/480036d79cea/nar00238-0184-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51bd/333607/3099cc3d9604/nar00238-0183-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51bd/333607/a925e5e691b2/nar00238-0184-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51bd/333607/480036d79cea/nar00238-0184-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51bd/333607/3099cc3d9604/nar00238-0183-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51bd/333607/a925e5e691b2/nar00238-0184-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51bd/333607/480036d79cea/nar00238-0184-b.jpg

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本文引用的文献

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