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使用5-甲基-dCTP替代dCTP进行聚合酶链式反应(PCR)。

PCR with 5-methyl-dCTP replacing dCTP.

作者信息

Wong K K, McClelland M

机构信息

California Institute of Biological Research, La Jolla 92037.

出版信息

Nucleic Acids Res. 1991 Mar 11;19(5):1081-5. doi: 10.1093/nar/19.5.1081.

DOI:10.1093/nar/19.5.1081
PMID:1850509
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC333784/
Abstract

When dCTP is replaced by methyl5-dCTP in the polymerase chain reaction some templates cannot be efficiently amplified by Taq polymerase or Vent polymerase using standard cycling parameters. However, this phenomenon can be overcome by increasing the temperature of the denaturation steps to 100 degrees C, or by adding dITP to destabilize the m5dC:dG base pairs. Once the block to amplification of m5dC-substituted DNA was overcome, methylated DNA from the 'superpolylinker' of the plasmid pSL 1180 was used as a substrate to check the methyl-sensitivity of a variety of restriction endonucleases. The m5dC-substituted DNAs should also be valuable substrates for defining the specificity of methyl-dependent endonucleases.

摘要

在聚合酶链反应中,当用甲基化5 - 脱氧胞苷三磷酸(methyl5 - dCTP)取代脱氧胞苷三磷酸(dCTP)时,一些模板无法使用标准循环参数通过Taq聚合酶或Vent聚合酶进行有效扩增。然而,这种现象可以通过将变性步骤的温度提高到100摄氏度,或者通过添加脱氧肌苷三磷酸(dITP)来破坏甲基化5 - 脱氧胞苷(m5dC)与鸟嘌呤(dG)碱基对的稳定性来克服。一旦克服了对甲基化5 - 脱氧胞苷取代DNA扩增的阻碍,就使用来自质粒pSL 1180“超级多克隆位点”的甲基化DNA作为底物,来检测各种限制性内切酶的甲基敏感性。甲基化5 - 脱氧胞苷取代的DNA对于确定甲基依赖性内切酶的特异性也应是有价值的底物。

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本文引用的文献

1
The chemistry and biology of left-handed Z-DNA.左手螺旋Z-DNA的化学与生物学
Annu Rev Biochem. 1984;53:791-846. doi: 10.1146/annurev.bi.53.070184.004043.
2
Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction.通过聚合酶催化的链式反应在体外特异性合成DNA。
Methods Enzymol. 1987;155:335-50. doi: 10.1016/0076-6879(87)55023-6.
3
Alterations in DNA helix stability due to base modifications can be evaluated using denaturing gradient gel electrophoresis.由于碱基修饰导致的DNA螺旋稳定性改变可通过变性梯度凝胶电泳进行评估。
一种使用甲基化依赖性限制酶MspJI进行半随机DNA扩增子片段化的简单方法。
BMC Biotechnol. 2015 Apr 11;15:25. doi: 10.1186/s12896-015-0139-7.
4
DREAMing of a patent-free human genome for clinical sequencing.梦想着用于临床测序的无专利人类基因组。
Nat Biotechnol. 2013 Oct;31(10):884-7. doi: 10.1038/nbt.2703.
5
3'-Protected 2'-deoxynucleoside 5'-triphosphates as a tool for heat-triggered activation of polymerase chain reaction.3'-保护的2'-脱氧核苷5'-三磷酸作为热触发聚合酶链反应激活工具
Anal Chem. 2009 Jun 15;81(12):4955-62. doi: 10.1021/ac8026977.
6
A novel method for producing partial restriction digestion of DNA fragments by PCR with 5-methyl-CTP.一种通过使用5-甲基胞苷三磷酸(5-methyl-CTP)进行聚合酶链反应(PCR)来产生DNA片段部分限制性消化的新方法。
Nucleic Acids Res. 1997 Oct 15;25(20):4169-71. doi: 10.1093/nar/25.20.4169.
7
Rapid analysis of DNA methylation using new restriction enzyme sites created by bisulfite modification.利用亚硫酸氢盐修饰产生的新限制性酶切位点对DNA甲基化进行快速分析。
Nucleic Acids Res. 1996 Dec 15;24(24):5058-9. doi: 10.1093/nar/24.24.5058.
8
Effect of site-specific methylation on restriction endonucleases and DNA modification methyltransferases.位点特异性甲基化对限制性内切核酸酶和DNA修饰甲基转移酶的影响。
Nucleic Acids Res. 1993 Jul 1;21(13):3139-54. doi: 10.1093/nar/21.13.3139.
9
Hypomethylation of classical satellite DNA and chromosome instability in lymphoblastoid cell lines.淋巴母细胞系中经典卫星DNA的低甲基化与染色体不稳定性
Hum Genet. 1993 Jul;91(6):538-46. doi: 10.1007/BF00205077.
10
Probing CpG methylation at CACGTG with BbrPI restriction enzyme.用BbrPI限制酶检测CACGTG处的CpG甲基化。
Nucleic Acids Res. 1993 Jun 25;21(12):2950. doi: 10.1093/nar/21.12.2950.
J Mol Biol. 1987 Dec 20;198(4):737-44. doi: 10.1016/0022-2836(87)90214-2.
4
Escherichia coli K-12 restricts DNA containing 5-methylcytosine.大肠杆菌K-12会限制含有5-甲基胞嘧啶的DNA。
Proc Natl Acad Sci U S A. 1986 Dec;83(23):9070-4. doi: 10.1073/pnas.83.23.9070.
5
Superpolylinkers in cloning and expression vectors.克隆和表达载体中的超级多聚接头
DNA. 1989 Dec;8(10):759-77. doi: 10.1089/dna.1989.8.759.
6
Cytosine methylated DNA synthesized by Taq polymerase used to assay methylation sensitivity of restriction endonuclease HinfI.由Taq聚合酶合成的胞嘧啶甲基化DNA用于检测限制性内切酶HinfI的甲基化敏感性。
Nucleic Acids Res. 1991 Jan 25;19(2):391-4. doi: 10.1093/nar/19.2.391.
7
Unusual properties of the DNA from Xanthomonas phage XP-12 in which 5-methylcytosine completely replaces cytosine.
Biochim Biophys Acta. 1975 Jun 16;395(2):109-19. doi: 10.1016/0005-2787(75)90149-5.