Requimte-CQFB, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Campus Caparica, 2829-516 Caparica, Portugal.
Biochem Biophys Res Commun. 2010 Mar 12;393(3):466-70. doi: 10.1016/j.bbrc.2010.02.024. Epub 2010 Feb 10.
Multiheme proteins play major roles in various biological systems. Structural information on these systems in solution is crucial to understand their functional mechanisms. However, the presence of numerous proton-containing groups in the heme cofactors and the magnetic properties of the heme iron, in particular in the oxidised state, complicates significantly the assignment of the NMR signals. Consequently, the multiheme proteins superfamily is extremely under-represented in structural databases, which constitutes a severe bottleneck in the elucidation of their structural-functional relationships. In this work, we present a strategy that simplifies the assignment of the NMR signals in multiheme proteins and, concomitantly, their solution structure determination, using the triheme cytochrome PpcA from the bacterium Geobacter sulfurreducens as a model. Cost-effective isotopic labeling was used to double label (13C/15N) the protein in its polypeptide chain, with the correct folding and heme post-translational modifications. The combined analysis of 1H-13C HSQC NMR spectra obtained for labeled and unlabeled samples of PpcA allowed a straight discrimination between the heme cofactors and the polypeptide chain signals and their confident assignment. The results presented here will be the foundations to assist solution structure determination of multiheme proteins, which are still very scarce in the literature.
多血红素蛋白在各种生物系统中发挥着重要作用。这些系统在溶液中的结构信息对于理解其功能机制至关重要。然而,血红素辅基中存在大量质子供体基团,以及血红素铁的磁性特性,特别是在氧化状态下,极大地增加了 NMR 信号的分配难度。因此,多血红素蛋白超家族在结构数据库中的代表性非常低,这是阐明其结构-功能关系的严重瓶颈。在这项工作中,我们提出了一种策略,使用来自细菌 Geobacter sulfurreducens 的三血红素细胞色素 PpcA 作为模型,简化多血红素蛋白中 NMR 信号的分配,并同时确定其溶液结构。使用具有成本效益的同位素标记方法对蛋白质的多肽链进行双重标记(13C/15N),以确保正确折叠和血红素翻译后修饰。对标记和未标记的 PpcA 样品进行的 1H-13C HSQC NMR 光谱的联合分析,可以直接区分血红素辅基和多肽链信号,并对其进行可靠的分配。这里呈现的结果将为辅助多血红素蛋白的溶液结构确定奠定基础,目前该领域的文献仍然非常稀缺。