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从 G. sulfurreducens 中分离得到的一种独特多血红素细胞色素 GSU0105 的结构与功能研究。

Structural and functional insights of GSU0105, a unique multiheme cytochrome from G. sulfurreducens.

机构信息

Associate Laboratory i4HB - Institute for Health and Bioeconomy, Caparica, Portugal; UCIBIO - Applied Molecular Biosciences Unit, Department of Chemistry, NOVA School of Science and Technology, NOVA University Lisbon, Caparica, Portugal.

Instituto de Tecnologia Química e Biológica António Xavier, NOVA University Lisbon, Oeiras, Portugal.

出版信息

Biophys J. 2021 Dec 7;120(23):5395-5407. doi: 10.1016/j.bpj.2021.10.023. Epub 2021 Oct 22.

Abstract

Geobacter sulfurreducens possesses over 100 cytochromes that assure an effective electron transfer to the cell exterior. The most abundant group of cytochromes in this microorganism is the PpcA family, composed of five periplasmic triheme cytochromes with high structural homology and identical heme coordination (His-His). GSU0105 is a periplasmic triheme cytochrome synthetized by G. sulfurreducens in Fe(III)-reducing conditions but is not present in cultures grown on fumarate. This cytochrome has a low sequence identity with the PpcA family cytochromes and a different heme coordination, based on the analysis of its amino acid sequence. In this work, amino acid sequence analysis, site-directed mutagenesis, and complementary biophysical techniques, including ultraviolet-visible, circular dichroism, electron paramagnetic resonance, and nuclear magnetic resonance spectroscopies, were used to characterize GSU0105. The cytochrome has a low percentage of secondary structural elements, with features of α-helices and β-sheets. Nuclear magnetic resonance shows that the protein contains three low-spin hemes (Fe(II), S = 0) in the reduced state. Electron paramagnetic resonance shows that, in the oxidized state, one of the hemes becomes high-spin (Fe(III), S = 5/2), whereas the two others remain low-spin (Fe(III), S = 1/2). The data obtained also indicate that the heme groups have distinct axial coordination. The apparent midpoint reduction potential of GSU0105 (-154 mV) is pH independent in the physiological range. However, the pH modulates the reduction potential of the heme that undergoes the low- to high-spin interconversion. The reduction potential values of cytochrome GSU0105 are more distinct compared to those of the PpcA family members, providing the protein with a larger functional working redox potential range. Overall, the results obtained, together with an amino acid sequence analysis of different multiheme cytochrome families, indicate that GSU0105 is a member of a new group of triheme cytochromes.

摘要

脱硫杆菌拥有超过 100 种细胞色素,可确保有效地将电子转移到细胞外部。在这种微生物中,最丰富的细胞色素群体是 PpcA 家族,由五个具有高度结构同源性且血红素配位相同(His-His)的周质三血红素细胞色素组成。GSU0105 是在 Fe(III)还原条件下由 G. sulfurreducens 合成的周质三血红素细胞色素,但在富马酸盐生长的培养物中不存在。该细胞色素与 PpcA 家族细胞色素的序列同一性较低,并且根据其氨基酸序列分析,血红素配位也不同。在这项工作中,使用氨基酸序列分析、定点突变和互补的生物物理技术,包括紫外可见光谱、圆二色性、电子顺磁共振和核磁共振波谱,对 GSU0105 进行了表征。该细胞色素的二级结构元件比例较低,具有α-螺旋和β-折叠的特征。核磁共振表明,该蛋白质在还原状态下含有三个低自旋血红素(Fe(II),S = 0)。电子顺磁共振表明,在氧化状态下,一个血红素变为高自旋(Fe(III),S = 5/2),而另外两个保持低自旋(Fe(III),S = 1/2)。获得的数据还表明,血红素基团具有不同的轴向配位。GSU0105 的表观中点还原电位(-154 mV)在生理范围内与 pH 无关。然而,pH 会调节发生低到高自旋相互转化的血红素的还原电位。与 PpcA 家族成员相比,细胞色素 GSU0105 的还原电位值更为明显,为该蛋白提供了更大的功能工作氧化还原电位范围。总的来说,获得的结果以及对不同多血红素细胞色素家族的氨基酸序列分析表明,GSU0105 是一组新的三血红素细胞色素的成员。

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