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使用单基因进行癌症分类。

Cancer classification using single genes.

作者信息

Wang Xiaosheng, Gotoh Osamu

机构信息

Department of Intelligence Science and Technology, Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan.

出版信息

Genome Inform. 2009 Oct;23(1):179-88.

Abstract

We present a method for She classification of cancer based on gene expression profiles using single genes. We select the genes with high class-discrimination capability according to their depended degree by the classes. We then build classifiers based on the decision rules induced by single genes selected. We test our single-gene classification method on three publicly available cancerous gene expression datasets. In a majority of cases, we gain relatively accurate classification outcomes by just utilizing one gene. Some genes highly correlated with the pathogenesis of cancer are identified. Our feature selection and classification approaches are both based on rough sets, a machine learning method. In comparison with other methods, our method is simple, effective and robust. We conclude that, if gene selection is implemented reasonably, accurate molecular classification of cancer can be achieved with very simple predictive models based on gene expression profiles.

摘要

我们提出了一种基于单基因表达谱进行癌症分类的方法。我们根据基因与类别之间的依赖程度选择具有高类别区分能力的基因。然后,我们基于所选单基因诱导的决策规则构建分类器。我们在三个公开可用的癌症基因表达数据集上测试了我们的单基因分类方法。在大多数情况下,仅使用一个基因就能获得相对准确的分类结果。识别出了一些与癌症发病机制高度相关的基因。我们的特征选择和分类方法均基于机器学习方法粗糙集。与其他方法相比,我们的方法简单、有效且稳健。我们得出结论,如果合理地进行基因选择,基于基因表达谱的非常简单的预测模型就能实现癌症的准确分子分类。

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