• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

配体密堆积、分子紧凑性、甲基倾斜、分子构象以及端基效应的新模型。

Ligand close packing, molecular compactness, the methyl tilt, molecular conformations, and a new model for the anomeric effect.

机构信息

Department of Chemistry, McMaster University, Hamilton, Ontario L8S 4M1, Canada.

出版信息

Chemistry. 2010 Mar 22;16(12):3663-75. doi: 10.1002/chem.200902599.

DOI:10.1002/chem.200902599
PMID:20183833
Abstract

All the atoms in a molecule attract each other until they reach their equilibrium positions at which point the repulsive forces between the atoms just balance the attractive forces and there are no resultant forces acting on any of the atoms in the molecule. Thus, we can consider that in the equilibrium geometry the atoms in a molecule are arranged as compactly as possible. This is the basis of the ligand close packing (LCP) model according to which three or four monatomic ligands X, such as F, Cl or O (formally =O or O(-)) pack as closely as possible around a small central atom such as a boron or carbon atom giving a truly close-packed equilateral triangular AX(3) molecule or a tetrahedral AX(4) molecules. Such monatomic ligands can, to a good approximation, be described as having a spherical shape with a single ligand radius r(X). In contrast, ligands with donor atoms with lone pairs such as the oxygen atom in an OX group have a less symmetrical electron density requiring two ligand radii, r(O(lp)) in the lone pair direction, and r(O(b)) in the bonding direction, where r(O(lp)) < r(O(b)) for an approximate description. On this basis we propose an explanation for the "methyl tilt", in methanol and many related molecules, and in conjunction with the concept of compactness, a model for explaining the relative energies of the conformations of molecules containing OH and OMe ligands, including molecules that exhibit the anomeric effect. We compare our model for the anomeric effect with the widely accepted "hyperconjugation" model. We also discuss the relationship between the concept of compactness and the concept of hardness.

摘要

在分子中,所有原子都相互吸引,直到它们到达平衡位置,此时原子之间的斥力刚好平衡引力,分子中没有任何原子受到合力的作用。因此,我们可以认为在平衡几何形状中,分子中的原子尽可能紧凑地排列。这就是配体紧密堆积(LCP)模型的基础,根据该模型,三个或四个单原子配体 X,如 F、Cl 或 O(形式上为 =O 或 O(-)),尽可能紧密地围绕一个小的中心原子如硼或碳原子排列,形成真正的紧密堆积等边三角形 AX(3)分子或四面体 AX(4)分子。这样的单原子配体可以很好地近似为具有单一配体半径 r(X)的球形。相比之下,具有孤对电子的配体原子,如 OX 基团中的氧原子,具有不太对称的电子密度,需要两个配体半径 r(O(lp))在孤对电子方向上和 r(O(b))在成键方向上,其中 r(O(lp)) < r(O(b))是一个近似描述。基于此,我们提出了对甲醇和许多相关分子中“甲基倾斜”现象的解释,以及结合紧凑性概念,对含有 OH 和 OMe 配体的分子构象相对能量的解释模型,包括表现出端基效应的分子。我们将我们的端基效应模型与广泛接受的“超共轭”模型进行了比较。我们还讨论了紧凑性概念和硬度概念之间的关系。

相似文献

1
Ligand close packing, molecular compactness, the methyl tilt, molecular conformations, and a new model for the anomeric effect.配体密堆积、分子紧凑性、甲基倾斜、分子构象以及端基效应的新模型。
Chemistry. 2010 Mar 22;16(12):3663-75. doi: 10.1002/chem.200902599.
2
The geometry of nonmetal hydrides and the ligand radius of hydrogen.非金属氢化物的几何结构与氢的配体半径。
Inorg Chem. 2004 Apr 5;43(7):2318-23. doi: 10.1021/ic030290v.
3
Ligand close packing and the geometry of the fluorides of the nonmetals of periods 3, 4, and 5.配体紧密堆积与第3、4和5周期非金属氟化物的几何结构。
Inorg Chem. 2003 Jun 16;42(12):3865-72. doi: 10.1021/ic030024h.
4
Treatment of dilute clusters of methanol and water by ab initio quantum mechanical calculations.采用从头算量子力学计算方法对甲醇和水的稀团簇进行处理。
J Phys Chem A. 2005 Feb 10;109(5):807-15. doi: 10.1021/jp046536e.
5
Ligand effects on the structures and magnetic properties of tricyanomethanide-containing copper(II) complexes.配体对含三氰基甲烷铜(II)配合物结构和磁性的影响。
Dalton Trans. 2007 Nov 28(44):5190-200. doi: 10.1039/b709233d. Epub 2007 Sep 6.
6
A topological study of the geometry of AF6E molecules: weak and inactive lone pairs.AF6E分子几何结构的拓扑研究:弱孤对电子和非活性孤对电子
Inorg Chem. 2006 Aug 7;45(16):6198-204. doi: 10.1021/ic052182+.
7
Interpretation of anomeric effect in the N-C-N unit with the quantum theory of atoms in molecules.用分子中的原子量子理论解释N-C-N单元中的端基异构效应。
J Phys Chem A. 2007 Aug 30;111(34):8491-9. doi: 10.1021/jp073801y. Epub 2007 Aug 9.
8
Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.可视化和量化分子拟合优度:带有显式氢原子的小探针接触点
J Mol Biol. 1999 Jan 29;285(4):1711-33. doi: 10.1006/jmbi.1998.2400.
9
Anomeric effect in "high energy" phosphate bonds. Selective destabilization of the scissile bond and modulation of the exothermicity of hydrolysis.“高能”磷酸键中的异头效应。可裂解键的选择性去稳定作用及水解放热的调节。
J Am Chem Soc. 2008 Mar 19;130(11):3349-58. doi: 10.1021/ja073652x. Epub 2008 Feb 27.
10
SuperStar: improved knowledge-based interaction fields for protein binding sites.超级明星:用于蛋白质结合位点的改进的基于知识的相互作用场
J Mol Biol. 2001 Mar 30;307(3):841-59. doi: 10.1006/jmbi.2001.4452.

引用本文的文献

1
Methanetetrol and the final frontier in ortho acids.甲四醇与原酸的终极前沿。
Nat Commun. 2025 Jul 14;16(1):6468. doi: 10.1038/s41467-025-61561-z.
2
Sensing the anomeric effect in a solvent-free environment.在无溶剂环境中感知端基效应。
Nature. 2011 Jan 6;469(7328):76-9. doi: 10.1038/nature09693.