Ursu Ramona Gabriela, Onofriescu M, Nemescu D, Iancu Luminiţa Smaranda
Facultatea de Medicină, Disciplina de Microbiologie, Universitatea de Medicină si Farmacie "Gr.T. Popa" Iaşi.
Rev Med Chir Soc Med Nat Iasi. 2009 Oct-Dec;113(4):1205-10.
optimisation of Real Time PCR technique for quantifying oncogenic types 16 and 18 of Human Papilloma Viruses, genotyped through classic PCR, followed by hybridisation.
DNA/ HPV was purified with High Pure PCR Template Preparation kit (ROCHE DIAGNOSTICS), genotyping was performed with Linear Array HPV Genotyping (ROCHE DIAGNOSTICS) and PCR reaction was realized with ABI 9700 Gold Plate System. Absolute quantification of HPV 16 and 18 was performed with Path-HPV16/18 Real-time PCR detection kit for Human Papillomavirus, 2 x Precision Mastermix kits (PrimerDesign), and the instrument used was MX3000P STRATAGENE.
I. HPV genotyping was optimised through testing of 12 cervical samples, collected from patients who have signed the informed consent approved by the local Bioethical Committee. Among the tested samples, 5 were negative for any HPV type, 3 patients had unique infections with oncogenic HPV type, and 2 patients had multiple infections, with oncogenic and non-oncogenic HPV types. Negative and positive controls were validated, identical as the internal control - beta globin gene. II. Absolute quantification for HPV 16 and 18 were performed on two samples tested by the previous method. The number of viral copies was determined using the standard curves procedure, whose parameters values were between the accepted limits.
We fulfilled the quality criteria for both techniques: genotyping assay and viral load quantification by Real Time PCR. This allows us to start the study for monitoring persistent infections with HPV 16 and HPV 18.
优化实时荧光定量聚合酶链反应(Real Time PCR)技术,用于定量通过经典聚合酶链反应(PCR)进行基因分型,随后进行杂交的16型和18型人乳头瘤病毒(HPV)。
使用高纯PCR模板制备试剂盒(罗氏诊断公司)纯化DNA/HPV,采用线性阵列HPV基因分型试剂盒(罗氏诊断公司)进行基因分型,并使用ABI 9700金板系统进行PCR反应。使用人乳头瘤病毒Path-HPV16/18实时荧光定量PCR检测试剂盒、2x精密预混试剂盒(PrimerDesign)对HPV 16和18进行绝对定量,使用的仪器为MX3000P STRATAGENE。
一、通过对12份宫颈样本进行检测优化HPV基因分型,这些样本来自签署了当地生物伦理委员会批准的知情同意书的患者。在检测的样本中,5份对任何HPV类型均为阴性,3名患者感染了单一致癌型HPV,2名患者感染了多种HPV,包括致癌型和非致癌型。阴性和阳性对照得到验证,与内对照β-珠蛋白基因相同。二、对之前方法检测的两个样本进行HPV 16和18的绝对定量。使用标准曲线程序确定病毒拷贝数,其参数值在可接受范围内。
我们满足了两种技术的质量标准:基因分型检测和通过实时荧光定量PCR进行病毒载量定量。这使我们能够启动监测HPV 16和HPV 18持续感染的研究。