Shewregdb：用于希瓦氏菌属MR-1中实验性和预测性调控信息的数据库及可视化环境。
Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.
作者信息
Syed Mustafa H, Karpinets Tatiana V, Leuze Michael R, Kora Guruprasad H, Romine Margaret R, Uberbacher Edward C
机构信息
Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831, USA.
出版信息
Bioinformation. 2009 Oct 15;4(4):169-72. doi: 10.6026/97320630004169.
UNLABELLED
Shewanella oneidensis MR-1 is an important model organism for environmental research as it has an exceptional metabolic and respiratory versatility regulated by a complex regulatory network. We have developed a database to collect experimental and computational data relating to regulation of gene and protein expression, and, a visualization environment that enables integration of these data types. The regulatory information in the database includes predictions of DNA regulator binding sites, sigma factor binding sites, transcription units, operons, promoters, and RNA regulators including non-coding RNAs, riboswitches, and different types of terminators.
AVAILABILITY
http://shewanella-knowledgebase.org:8080/Shewanella/gbrowserLanding.jsp.
未标注
嗜铁素还原地杆菌MR-1是环境研究中的一种重要模式生物，因为它具有由复杂调控网络调节的非凡代谢和呼吸多样性。我们开发了一个数据库来收集与基因和蛋白质表达调控相关的实验和计算数据，以及一个能够整合这些数据类型的可视化环境。数据库中的调控信息包括DNA调控因子结合位点、sigma因子结合位点、转录单元、操纵子、启动子以及RNA调控因子（包括非编码RNA、核糖开关和不同类型的终止子）的预测。
可用性
http://shewanella-knowledgebase.org:8080/Shewanella/gbrowserLanding.jsp 。
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