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用于在4-9的pH范围内从栉孔扇贝中结晶血红蛋白II的两步反向扩散协议。

Two-step counterdiffusion protocol for the crystallization of haemoglobin II from Lucina pectinata in the pH range 4-9.

作者信息

Nieves-Marrero Carlos A, Ruiz-Martínez Carlos R, Estremera-Andújar Rafael A, González-Ramírez Luis A, López-Garriga Juan, Gavira José A

机构信息

Chemistry Department, PO Box 9019, University of Puerto Rico, Mayagüez Campus, Mayagüez, Puerto Rico.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt 3):264-8. doi: 10.1107/S1744309109053081. Epub 2010 Feb 24.

Abstract

Lucina pectinata haemoglobin II (HbII) transports oxygen in the presence of H(2)S to the symbiotic system in this bivalve mollusc. The composition of the haem pocket at the distal site includes TyrB10 and GlnE7, which are very common in other haem proteins. Obtaining crystals of oxyHbII at various pH values is required in order to elucidate the changes in the conformations of TyrB10 and GlnE7 and structural scenarios induced by changes in pH. Here, the growth of crystals of oxyHbII using the capillary counterdiffusion (CCD) technique at various pH values using a two-step protocol is reported. In the first step, a mini-screen was used to validate sodium formate as the best precipitating reagent for the growth of oxyHbII crystals. The second step, a pH screen typically used for optimization, was used to produce crystals in the pH range 4-9. Very well faceted prismatic ruby-red crystals were obtained at all pH values. X-ray data sets were acquired using synchrotron radiation of wavelength 0.886 A (for the crystals obtained at pH 5) and 0.908 A (for those obtained at pH 4, 8 and 9) to maximum resolutions of 3.30, 1.95, 1.85 and 2.00 A for the crystals obtained at pH 4, 5, 8 and 9, respectively. All of the crystals were isomorphous and belonged to space group P4(2)2(1)2.

摘要

栉孔扇贝血红蛋白II(HbII)在硫化氢存在的情况下将氧气输送到这种双壳贝类的共生系统中。远端位点血红素口袋的组成包括TyrB10和GlnE7,这在其他血红素蛋白中非常常见。为了阐明TyrB10和GlnE7构象的变化以及pH值变化引起的结构情况,需要获得不同pH值下的氧合HbII晶体。在此,报道了使用两步法通过毛细管反向扩散(CCD)技术在不同pH值下生长氧合HbII晶体的情况。第一步,使用微型筛选来验证甲酸钠是生长氧合HbII晶体的最佳沉淀剂。第二步,使用通常用于优化的pH筛选在4-9的pH范围内产生晶体。在所有pH值下都获得了非常好的多面棱柱形红宝石红色晶体。使用波长为0.886 Å(对于在pH 5下获得的晶体)和0.908 Å(对于在pH 4、8和9下获得的晶体)的同步辐射分别在pH 4、5、8和9下获得的晶体的最大分辨率为3.30、1.95、1.85和2.00 Å来采集X射线数据集。所有晶体都是同晶型的,属于空间群P4(2)2(1)2。

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