• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于下一代测序的 DNA 文库的快速定量。

Rapid quantification of DNA libraries for next-generation sequencing.

机构信息

Agilent Technologies, 11011 N. Torrey Pines Road, La Jolla, CA 92037, USA.

出版信息

Methods. 2010 Apr;50(4):S15-8. doi: 10.1016/j.ymeth.2010.01.004.

DOI:10.1016/j.ymeth.2010.01.004
PMID:20215015
Abstract

The next-generation DNA sequencing workflows require an accurate quantification of the DNA molecules to be sequenced which assures optimal performance of the instrument. Here, we demonstrate the use of qPCR for quantification of DNA libraries used in next-generation sequencing. In addition, we find that qPCR quantification may allow improvements to current NGS workflows, including reducing the amount of library DNA required, increasing the accuracy in quantifying amplifiable DNA, and avoiding amplification bias by reducing or eliminating the need to amplify DNA before sequencing.

摘要

下一代 DNA 测序工作流程需要对要测序的 DNA 分子进行精确的定量,以确保仪器的最佳性能。在这里,我们展示了 qPCR 在下一代测序中用于定量 DNA 文库的应用。此外,我们发现 qPCR 定量可能会改进当前的 NGS 工作流程,包括减少所需文库 DNA 的量、提高可扩增 DNA 定量的准确性以及通过减少或消除测序前扩增 DNA 的需要来避免扩增偏倚。

相似文献

1
Rapid quantification of DNA libraries for next-generation sequencing.用于下一代测序的 DNA 文库的快速定量。
Methods. 2010 Apr;50(4):S15-8. doi: 10.1016/j.ymeth.2010.01.004.
2
Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries.测序文库扩增过程中的长度和 GC 偏倚:各种聚合酶-缓冲系统与古老和现代 DNA 测序文库的比较。
Biotechniques. 2012 Feb;52(2):87-94. doi: 10.2144/000113809.
3
Method for improving sequence coverage uniformity of targeted genomic intervals amplified by LR-PCR using Illumina GA sequencing-by-synthesis technology.使用Illumina GA合成测序技术通过长片段PCR扩增来提高靶向基因组区间序列覆盖均匀性的方法。
Biotechniques. 2009 Mar;46(3):229-31. doi: 10.2144/000113082.
4
Library preparation methods for next-generation sequencing: tone down the bias.下一代测序文库制备方法:减少偏倚。
Exp Cell Res. 2014 Mar 10;322(1):12-20. doi: 10.1016/j.yexcr.2014.01.008. Epub 2014 Jan 15.
5
Single-molecule polymerase chain reaction reduces bias: application to DNA methylation analysis by bisulfite sequencing.单分子聚合酶链反应减少偏差:在亚硫酸氢盐测序法进行DNA甲基化分析中的应用
Anal Biochem. 2008 Jun 1;377(1):46-54. doi: 10.1016/j.ab.2008.02.026. Epub 2008 Mar 4.
6
Target-enrichment through amplification of hairpin-ligated universal targets for next-generation sequencing analysis.通过扩增发夹连接的通用靶标进行靶标富集,用于下一代测序分析。
Methods Mol Biol. 2011;733:267-78. doi: 10.1007/978-1-61779-089-8_19.
7
Enabling technologies of genomic-scale sequence enrichment for targeted high-throughput sequencing.用于靶向高通量测序的基因组规模序列富集的使能技术。
Genomics. 2009 Dec;94(6):363-8. doi: 10.1016/j.ygeno.2009.08.012. Epub 2009 Aug 29.
8
Cloning and direct sequencing from lambda cDNA libraries using the polymerase chain reaction: suppressin and the vasopressin receptor as models.利用聚合酶链反应从λ噬菌体cDNA文库进行克隆及直接测序:以抑制素和血管加压素受体作为模型
Neth J Med. 1991 Oct;39(3-4):295-305.
9
Amplification-free library preparation for paired-end Illumina sequencing.用于双端Illumina测序的无扩增文库制备
Methods Mol Biol. 2011;733:257-66. doi: 10.1007/978-1-61779-089-8_18.
10
A duplex real-time qPCR assay for the quantification of human nuclear and mitochondrial DNA in forensic samples: implications for quantifying DNA in degraded samples.一种用于法医样本中人类核DNA和线粒体DNA定量的双重实时定量PCR检测方法:对降解样本中DNA定量的意义
J Forensic Sci. 2005 Sep;50(5):1044-60.

引用本文的文献

1
Harnessing eDNA technology to identify fish diversity and distribution in the Kashi River, a tributary of the Ili River, Xinjiang, China.利用环境DNA技术识别中国新疆伊犁河支流喀什河中的鱼类多样性和分布情况。
Sci Rep. 2025 Aug 1;15(1):28187. doi: 10.1038/s41598-025-14079-9.
2
A chromosome-level genome assembly of the soybean pod borer: insights into larval transcriptional response to transgenic soybean expressing the pesticidal Cry1Ac protein.大豆荚螟染色体水平基因组组装:Cry1Ac 杀虫蛋白表达的转基因大豆对幼虫转录反应的研究。
BMC Genomics. 2024 Apr 9;25(1):355. doi: 10.1186/s12864-024-10216-2.
3
Quantification of massively parallel sequencing libraries - a comparative study of eight methods.
高通量测序文库定量分析 - 8 种方法的比较研究。
Sci Rep. 2018 Jan 18;8(1):1110. doi: 10.1038/s41598-018-19574-w.
4
Use of the melting curve assay as a means for high-throughput quantification of Illumina sequencing libraries.使用熔解曲线分析作为高通量定量Illumina测序文库的一种方法。
PeerJ. 2016 Aug 4;4:e2281. doi: 10.7717/peerj.2281. eCollection 2016.
5
Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow.迈向液体活检时代可靠的生物标志物特征——如何规范小RNA测序工作流程。
Nucleic Acids Res. 2016 Jul 27;44(13):5995-6018. doi: 10.1093/nar/gkw545. Epub 2016 Jun 17.
6
Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate.从填充一个454皮升滴定板所需的最少DNA分子数量直接进行测序。
PLoS One. 2014 Jun 2;9(6):e97379. doi: 10.1371/journal.pone.0097379. eCollection 2014.
7
Simultaneous digital quantification and fluorescence-based size characterization of massively parallel sequencing libraries.大规模平行测序文库的同步数字定量和基于荧光的大小表征
Biotechniques. 2013 Aug;55(2):61-7. doi: 10.2144/000114063.
8
Identification of sequence variants in genetic disease-causing genes using targeted next-generation sequencing.使用靶向下一代测序鉴定遗传疾病相关基因中的序列变异。
PLoS One. 2011;6(12):e29500. doi: 10.1371/journal.pone.0029500. Epub 2011 Dec 21.