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在蛋白质的中子散射测量中观察到的低温拐点是由于甲基旋转引起的:使用同位素标记和分子动力学模拟的直接证据。

The low-temperature inflection observed in neutron scattering measurements of proteins is due to methyl rotation: direct evidence using isotope labeling and molecular dynamics simulations.

机构信息

Institut Laue Langevin, Grenoble Cedex 9, France.

出版信息

J Am Chem Soc. 2010 Apr 14;132(14):4990-1. doi: 10.1021/ja910502g.

Abstract

There is increasing interest in the contribution of methyl groups to the overall dynamics measured by neutron scattering experiments of proteins. In particular an inflection observed in atomic mean square displacements measured as a function of temperature on high resolution spectrometers (approximately 1 microeV) was explained by the onset of methyl group rotations. By specifically labeling a non-methyl-containing side-chain in a native protein system, the purple membrane, and performing neutron scattering measurements, we here provide direct experimental evidence that the observed inflection is indeed due to methyl group rotations. Molecular dynamics simulations reproduce the experimental data, and their analysis suggests that the apparent transition is due to methyl group rotation entering the finite instrumental resolution of the spectrometer. Methyl group correlation times measured by solid state NMR in the purple membrane, taken from previous work, support the interpretation.

摘要

人们对甲基基团对通过蛋白质中子散射实验测量的整体动力学的贡献越来越感兴趣。特别是,在高分辨率光谱仪上测量的原子均方位移随温度的变化(约 1 微电子伏特)中观察到的拐点,通过甲基基团旋转的开始得到了解释。通过在天然蛋白质系统紫膜中标记一个不含甲基的侧链,并进行中子散射测量,我们在这里提供了直接的实验证据,证明观察到的拐点确实是由于甲基基团的旋转。分子动力学模拟再现了实验数据,其分析表明,表观转变是由于甲基基团的旋转进入了光谱仪的有限仪器分辨率。紫膜中固态 NMR 测量的甲基相关时间取自以前的工作,支持了这一解释。

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