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溶剂驱动的淀粉样纤维疏水区中苯丙氨酸侧链的动态转变:通过 H NMR 弛豫检测。

Solvent-Driven Dynamical Crossover in the Phenylalanine Side-Chain from the Hydrophobic Core of Amyloid Fibrils Detected by H NMR Relaxation.

机构信息

Department of Chemistry, University of Colorado at Denver , Denver, Colorado 80204, United States.

Department of Mathematics, University of Colorado at Denver , Denver, Colorado 80204, United States.

出版信息

J Phys Chem B. 2017 Aug 3;121(30):7267-7275. doi: 10.1021/acs.jpcb.7b04726. Epub 2017 Jul 21.

Abstract

Aromatic residues are important markers of dynamical changes in proteins' hydrophobic cores. In this work we investigated the dynamics of the F19 side-chain in the core of amyloid fibrils across a wide temperature range of 300 to 140 K. We utilized solid-state H NMR relaxation to demonstrate the presence of a solvent-driven dynamical crossover between different motional regimes, often also referred to as the dynamical transition. In particular, the dynamics are dominated by small-angle fluctuations at low temperatures and by π-flips of the aromatic ring at high temperatures. The crossover temperature is more than 43 degrees lower for the hydrated state of the fibrils compared to the dry state, indicating that interactions with water facilitate π-flips. Further, crossover temperatures are shown to be very sensitive to polymorphic states of the fibrils, such as the 2-fold and 3-fold symmetric morphologies of the wild-type protein as well as D23N mutant protofibrils. We speculate that these differences can be attributed, at least partially, to enhanced interactions with water in the 3-fold polymorph, which has been shown to have a water-accessible cavity. Combined with previous studies of methyl group dynamics, the results highlight the presence of multiple dynamics modes in the core of the fibrils, which was originally believed to be quite rigid.

摘要

芳香族残基是蛋白质疏水核心动态变化的重要标志物。在这项工作中,我们研究了 F19 侧链在淀粉样纤维核心中的动力学,温度范围从 300 到 140 K。我们利用固态 H NMR 弛豫来证明存在不同运动状态之间的溶剂驱动动力学交叉,通常也称为动力学转变。特别是,在低温下,动力学主要由小角度波动主导,而在高温下则由芳香环的π翻转主导。与干燥状态相比,水合状态下纤维的交叉温度低 43 度以上,表明与水的相互作用促进了 π 翻转。此外,交叉温度对纤维的多晶态非常敏感,例如野生型蛋白的 2 倍和 3 倍对称形态以及 D23N 突变原纤维。我们推测,这些差异至少部分归因于 3 倍多晶型中与水的相互作用增强,已经表明该多晶型具有可接近水的空腔。结合先前对甲基动力学的研究,结果突出了纤维核心中存在多种动力学模式,而最初认为该核心相当刚性。

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