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stigmergic基因转移与通用编码的出现

Stigmergic gene transfer and emergence of universal coding.

作者信息

Prokopenko Mikhail, Polani Daniel, Chadwick Matthew

出版信息

HFSP J. 2009 Oct;3(5):317-27. doi: 10.2976/1.3175813. Epub 2009 Aug 6.

Abstract

We consider a simple information-theoretic model for evolutionary dynamics approaching the "coding threshold," where the capacity to symbolically represent nucleic acid sequences emerges in response to a change in environmental conditions. We study the conditions when a coupling between the dynamics of a "proto-cell" and its proto-symbolic representation becomes beneficial in terms of preserving the proto-cell's information in a noisy environment. In particular, we are interested in understanding the behavior at the "error threshold" level, which, in our case, turns out to be a whole "error interval." The useful coupling is accompanied by self-organization of internal processing, i.e., an increase in complexity within the evolving system. Second, we study whether and how different proto-cells can stigmergically share such information via a joint encoding, even if they have slightly different individual dynamics. Implications for the emergence of biological genetic code are discussed.

摘要

我们考虑一种简单的信息论模型,用于研究接近“编码阈值”的进化动力学,在这种情况下,随着环境条件的变化,核酸序列的符号化表示能力得以出现。我们研究了在有噪声的环境中,“原始细胞”的动力学与其原始符号表示之间的耦合何时对于保留原始细胞的信息变得有益。特别地,我们感兴趣的是理解“错误阈值”水平下的行为,在我们的模型中,这一水平结果是一个完整的“错误区间”。这种有用的耦合伴随着内部处理的自组织,即在不断进化的系统中复杂性增加。其次,我们研究不同的原始细胞是否以及如何能够通过联合编码以stigmergic方式共享此类信息,即使它们的个体动力学略有不同。我们还讨论了这对于生物遗传密码出现的意义。

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