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模块化锌指文库和蛋白质构建系统。

Modular system for the construction of zinc-finger libraries and proteins.

机构信息

The Skaggs Institute for Chemical Biology, La Jolla, California, USA.

出版信息

Nat Protoc. 2010 Apr;5(4):791-810. doi: 10.1038/nprot.2010.34. Epub 2010 Apr 1.

DOI:10.1038/nprot.2010.34
PMID:20360772
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2855653/
Abstract

Engineered zinc-finger transcription factors (ZF-TF) are powerful tools to modulate the expression of specific genes. Complex libraries of ZF-TF can be delivered into cells to scan the genome for genes responsible for a particular phenotype or to select the most effective ZF-TF to regulate an individual gene. In both cases, the construction of highly representative and unbiased libraries is critical. In this protocol, we describe a user-friendly ZF technology suitable for the creation of complex libraries and the construction of customized ZF-TFs. The new technology described here simplifies the building of ZF libraries, avoids PCR-introduced bias and ensures equal representation of every module. We also describe the construction of a customized ZF-TF that can be transferred to a number of expression vectors. This protocol can be completed in 9-11 d.

摘要

基因工程锌指转录因子(ZF-TF)是调节特定基因表达的有力工具。复杂的 ZF-TF 文库可以递送到细胞中,以扫描基因组中负责特定表型的基因,或选择最有效的 ZF-TF 来调节单个基因。在这两种情况下,构建高度有代表性和无偏倚的文库都是至关重要的。在本方案中,我们描述了一种用户友好的 ZF 技术,适用于复杂文库的构建和定制 ZF-TF 的构建。这里描述的新技术简化了 ZF 文库的构建,避免了 PCR 引入的偏差,并确保每个模块的均等表达。我们还描述了定制 ZF-TF 的构建,该 TF 可以转移到多个表达载体中。这个方案可以在 9-11 天内完成。

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Nat Struct Mol Biol. 2009 Nov;16(11):1195-9. doi: 10.1038/nsmb.1677. Epub 2009 Oct 18.
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Synthesis of programmable integrases.可编程整合酶的合成
Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5053-8. doi: 10.1073/pnas.0812502106. Epub 2009 Mar 12.
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Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.
Cells. 2022 May 6;11(9):1571. doi: 10.3390/cells11091571.
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Nuclear and mitochondrial DNA editing in human cells with zinc finger deaminases.锌指核酸酶在人类细胞中的核和线粒体 DNA 编辑。
Nat Commun. 2022 Jan 18;13(1):366. doi: 10.1038/s41467-022-27962-0.
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Endosomal disentanglement of a transducible artificial transcription factor targeting endothelin receptor A.靶向内皮素受体 A 的可转导人工转录因子的内体松解。
Mol Ther. 2022 Feb 2;30(2):855-867. doi: 10.1016/j.ymthe.2021.09.018. Epub 2021 Sep 20.
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Chromatin Manipulation and Editing: Challenges, New Technologies and Their Use in Plants.染色质操作和编辑:挑战、新技术及其在植物中的应用。
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Protein Delivery of Cell-Penetrating Zinc-Finger Activators Stimulates Latent HIV-1-Infected Cells.细胞穿透性锌指激活剂的蛋白质递送可刺激潜伏性HIV-1感染细胞。
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The clinical potential of gene editing as a tool to engineer cell-based therapeutics.基因编辑作为一种构建基于细胞的疗法的工具的临床潜力。
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