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变则规则:氨基酸按照旋转循环遗传密码进行交换。

The rules of variation: amino acid exchange according to the rotating circular genetic code.

机构信息

Universidad de Guadalajara, Centro Universitario de la Costa, Puerto Vallarta, Mexico.

出版信息

J Theor Biol. 2010 Jun 7;264(3):711-21. doi: 10.1016/j.jtbi.2010.03.046. Epub 2010 Apr 3.

Abstract

General guidelines for the molecular basis of functional variation are presented while focused on the rotating circular genetic code and allowable exchanges that make it resistant to genetic diseases under normal conditions. The rules of variation, bioinformatics aids for preventative medicine, are: (1) same position in the four quadrants for hydrophobic codons, (2) same or contiguous position in two quadrants for synonymous or related codons, and (3) same quadrant for equivalent codons. To preserve protein function, amino acid exchange according to the first rule takes into account the positional homology of essential hydrophobic amino acids with every codon with a central uracil in the four quadrants, the second rule includes codons for identical, acidic, or their amidic amino acids present in two quadrants, and the third rule, the smaller, aromatic, stop codons, and basic amino acids, each in proximity within a 90 degree angle. I also define codifying genes and palindromati, CTCGTGCCGAATTCGGCACGAG.

摘要

本文介绍了旋转循环遗传密码及其允许的交换,这些为功能变异的分子基础提供了一般性指导原则,使其在正常情况下能够抵抗遗传疾病。变异的规则,即预防性医学的生物信息学辅助,包括:(1)疏水性密码子在四个象限中的相同位置,(2)同义或相关密码子在两个象限中的相同或相邻位置,以及(3)等价密码子在相同的象限。为了保持蛋白质的功能,根据第一条规则进行的氨基酸交换考虑了四个象限中带有中央尿嘧啶的每个密码子的必需疏水性氨基酸的位置同源性,第二条规则包括两个象限中存在相同、酸性或酰胺基氨基酸的密码子,第三条规则是小的、芳香族、终止密码子和碱性氨基酸,每个密码子都在 90 度角的附近。我还定义了编码基因和回文结构 CTCGTGCCGAATTCGGCACGAG。

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