Department of Microbiology and The RNA Group, The Ohio State University, 484 West 12th Avenue, Columbus, OH 43210, USA.
Mol Microbiol. 2010 May;76(3):535-9. doi: 10.1111/j.1365-2958.2010.07133.x. Epub 2010 Apr 8.
Since the discovery of the first signal-sensing RNA structure by Grundy and Henkin in 1993, the list of cis-acting riboregulators has grown dramatically. Riboswitches fold into elaborate structures and respond to binding of small metabolites by altering the folding pattern of the surrounding transcript, thereby altering the gene expression programme. Riboswitches that use short-range mechanisms to control transcription attenuation and translation initiation and mediate mRNA cleavage have been characterized in many Gram-positive bacteria. Their action typically relies on alternative RNA structures that are differentially stabilized by the ligand binding. In this issue of Molecular Microbiology, Irnov and Winkler describe a novel Bacillus subtilis riboregulator called EAR that shares structural complexity with riboswitches but possesses a unique mechanism of action. EAR increases expression of exopolysaccharide genes and biofilm formation, and appears to act as a processive, long-range antiterminator, the first such example outside of Escherichia coli. While it is unclear whether EAR senses a biofilm-inducing signal, the results suggest that its action depends on yet unidentified auxiliary factors. Interestingly, efficient capsule biogenesis in E. coli and Bacteroides fragilis also depends on processive antiterminators but utilizes the protein-based mechanisms instead.
自 1993 年 Grundy 和 Henkin 发现第一个信号感应 RNA 结构以来,顺式作用的核糖调控因子的列表急剧增加。核糖开关折叠成复杂的结构,并通过改变周围转录本的折叠模式来响应小分子代谢物的结合,从而改变基因表达程序。已经在许多革兰氏阳性细菌中描述了使用短程机制来控制转录衰减和翻译起始并介导 mRNA 切割的核糖开关。它们的作用通常依赖于配体结合时差异稳定的替代 RNA 结构。在本期《分子微生物学》中,Irnov 和 Winkler 描述了一种新型枯草芽孢杆菌核糖开关 EAR,它与核糖开关具有复杂的结构,但具有独特的作用机制。EAR 增加了胞外多糖基因的表达和生物膜的形成,并且似乎作为一个连续的、长程终止子发挥作用,这是大肠杆菌以外的第一个此类例子。虽然尚不清楚 EAR 是否感应生物膜诱导信号,但结果表明其作用取决于尚未确定的辅助因子。有趣的是,大肠杆菌和脆弱拟杆菌中有效的荚膜生物发生也依赖于连续的终止子,但利用基于蛋白质的机制。