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真核生物早期祖先的内含子主导基因组。

Intron-dominated genomes of early ancestors of eukaryotes.

作者信息

Koonin Eugene V

机构信息

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

出版信息

J Hered. 2009 Sep-Oct;100(5):618-23. doi: 10.1093/jhered/esp056. Epub 2009 Jul 17.

DOI:10.1093/jhered/esp056
PMID:19617525
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2877545/
Abstract

Evolutionary reconstructions using maximum likelihood methods point to unexpectedly high densities of introns in protein-coding genes of ancestral eukaryotic forms including the last common ancestor of all extant eukaryotes. Combined with the evidence of the origin of spliceosomal introns from invading Group II self-splicing introns, these results suggest that early ancestral eukaryotic genomes consisted of up to 80% sequences derived from Group II introns, a much greater contribution of introns than that seen in any extant genome. An organism with such an unusual genome architecture could survive only under conditions of a severe population bottleneck.

摘要

使用最大似然法进行的进化重建表明,在包括所有现存真核生物的最后共同祖先在内的祖先真核生物形式的蛋白质编码基因中,内含子的密度出乎意料地高。结合剪接体内含子起源于入侵的II类自我剪接内含子的证据,这些结果表明,早期祖先真核生物基因组中高达80%的序列来自II类内含子,内含子的贡献比任何现存基因组都要大得多。具有这种不寻常基因组结构的生物体只有在严重种群瓶颈的条件下才能存活。

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Intron-dominated genomes of early ancestors of eukaryotes.真核生物早期祖先的内含子主导基因组。
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本文引用的文献

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Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.细菌和古菌的基因组学:原核生物世界新出现的动态观点。
Nucleic Acids Res. 2008 Dec;36(21):6688-719. doi: 10.1093/nar/gkn668. Epub 2008 Oct 23.
2
Crystal structure of a self-spliced group II intron.一种自我剪接的II类内含子的晶体结构。
Science. 2008 Apr 4;320(5872):77-82. doi: 10.1126/science.1153803.
3
Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach.采用灵活的最大似然法推断出的肺泡虫祖先中富含内含子的基因。
Mol Biol Evol. 2008 May;25(5):903-11. doi: 10.1093/molbev/msn039. Epub 2008 Feb 21.
4
Eukaryote evolution: engulfed by speculation.真核生物的进化:被猜测所笼罩。
Nature. 2007 Jun 21;447(7147):913. doi: 10.1038/447913a.
5
Three distinct modes of intron dynamics in the evolution of eukaryotes.真核生物进化过程中内含子动态变化的三种不同模式。
Genome Res. 2007 Jul;17(7):1034-44. doi: 10.1101/gr.6438607. Epub 2007 May 10.
6
Bacterial group II introns: not just splicing.细菌II组内含子:不仅仅是剪接。
FEMS Microbiol Rev. 2007 Apr;31(3):342-58. doi: 10.1111/j.1574-6976.2007.00068.x. Epub 2007 Mar 20.
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A glimpse of a putative pre-intron phase of eukaryotic evolution.对真核生物进化中一个假定的前内含子阶段的一瞥。
Trends Genet. 2007 Mar;23(3):105-8. doi: 10.1016/j.tig.2007.01.001. Epub 2007 Jan 19.
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The ancient Virus World and evolution of cells.古代病毒世界与细胞的进化
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Intron-rich ancestors.富含内含子的祖先。
Trends Genet. 2006 Sep;22(9):468-71. doi: 10.1016/j.tig.2006.07.002. Epub 2006 Jul 20.