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酶促反应中同位素效应温度依赖性的起源:二氢叶酸还原酶的实例

Origin of the temperature dependence of isotope effects in enzymatic reactions: the case of dihydrofolate reductase.

作者信息

Liu Hanbin, Warshel Arieh

机构信息

Department of Chemistry, University of Southern California, 3620 McClintock Avenue, Los Angeles, California 90089-1062, USA.

出版信息

J Phys Chem B. 2007 Jul 12;111(27):7852-61. doi: 10.1021/jp070938f. Epub 2007 Jun 16.

Abstract

The origin of the temperature dependence of kinetic isotope effects (KIEs) in enzyme reactions is a problem of general interest and a major challenge for computational chemistry. The present work simulates the nuclear quantum mechanical (NQM) effects and the corresponding KIE in dihydrofolate reductase (DHFR) and two of its mutants by using the empirical valence bond (EVB) and the quantum classical path (QCP) centroid path integral approach. Our simulations reproduce the overall observed trend while using a fully microscopic rather than a phenomenological picture and provide an interesting insight. It appears that the KIE increases when the distance between the donor and acceptor increases, in a somewhat counter intuitive way. The temperature dependence of the KIE appears to reflect mainly the temperature dependence of the distance between the donor and acceptor. This trend is also obtained from a simplified vibronic treatment, but as demonstrated here, the vibronic treatment is not valid at short and medium distances, where it is essential to use the path integral or other approaches capable of moving seamlessly from the adiabatic to the diabatic limits. It is pointed out that although the NQM effects do not contribute to catalysis in DHFR, the observed temperature dependence can be used to refine the potential of mean force for the donor and acceptor distance and its change due to distanced mutations.

摘要

酶促反应中动力学同位素效应(KIEs)对温度的依赖性起源是一个普遍关注的问题,也是计算化学面临的一项重大挑战。本研究采用经验价键(EVB)和量子经典路径(QCP)质心路径积分方法,模拟了二氢叶酸还原酶(DHFR)及其两个突变体中的核量子力学(NQM)效应和相应的KIE。我们的模拟重现了整体观察到的趋势,同时使用的是完全微观而非唯象的图像,并提供了有趣的见解。似乎当供体和受体之间的距离增加时,KIE会以某种有点违反直觉的方式增加。KIE对温度的依赖性似乎主要反映了供体和受体之间距离对温度的依赖性。这种趋势也可从简化的电子振动处理中得到,但如本文所示,电子振动处理在短距离和中距离时无效,在这些距离下,必须使用路径积分或其他能够无缝地从绝热极限过渡到非绝热极限的方法。需要指出的是,虽然NQM效应在DHFR催化中不起作用,但观察到的温度依赖性可用于完善供体和受体距离的平均力势及其因距离突变而产生的变化。

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