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通过粗粒度分子动力学模拟研究含肺表面活性蛋白SP-B(1-25)和SP-C的脂质单层的折叠。

Folding of lipid monolayers containing lung surfactant proteins SP-B(1-25) and SP-C studied via coarse-grained molecular dynamics simulations.

作者信息

Duncan Susan L, Larson Ronald G

机构信息

Dept. of Chemical Engineering, University of Michigan, 2300 Hayward St., 3074 H.H. Dow Building, Ann Arbor, Michigan 48109, USA.

出版信息

Biochim Biophys Acta. 2010 Sep;1798(9):1632-50. doi: 10.1016/j.bbamem.2010.04.006. Epub 2010 May 14.

Abstract

To explore the role of lung surfactant proteins SP-B and SP-C in storing and redelivering lipid from lipid monolayers during the compression and re-expansion occurring in lungs during breathing, we simulate the folding of lipid monolayers with and without these proteins. We utilize the MARTINI coarse-grained force field to simulate monolayers containing pure dipalmitoylphosphatidylcholine (DPPC) and DPPC mixed with palmitoyloleoylphosphatidylglycerol (POPG), palmitic acid (PA), and/or peptides. The peptides considered include the 25-residue N-terminal fragment of SP-B (SP-B(1-25)), SP-C, and several SP-B(1-25) mutants in which charged and hydrophilic residues are replaced by hydrophobic ones, or vice-versa. We observe two folding mechanisms: folding by the amplification of undulations and folding by nucleation about a defect. The first mechanism is observed in monolayers containing either POPG or peptides, while the second mechanism is observed only with peptides present, and involves the lipid-mediated aggregation of the peptides into a defect, from which the fold can nucleate. Fold nucleation from a defect displays a dependence on the hydrophobic character of the peptides; if the number of hydrophobic residues is decreased significantly, monolayer folding does not occur. The addition of POPG or peptides to the DPPC monolayer has a fluidizing effect, which assists monolayer folding. In contrast, the addition of PA has a charge-dependent condensing affect on DPPC monolayers containing SP-C. The peptides appear to play a significant role in the folding process, and provide a larger driving force for folding than POPG. In addition to promoting fold formation, the peptides also display fusogenic behavior, which can lead to surface refining.

摘要

为了探究肺表面活性蛋白SP-B和SP-C在呼吸过程中肺部发生的压缩和再扩张期间从脂质单层储存和重新释放脂质中的作用,我们模拟了有和没有这些蛋白质时脂质单层的折叠情况。我们利用MARTINI粗粒化力场来模拟含有纯二棕榈酰磷脂酰胆碱(DPPC)以及与棕榈酰油酰磷脂酰甘油(POPG)、棕榈酸(PA)和/或肽混合的DPPC的单层。所考虑的肽包括SP-B的25个残基的N端片段(SP-B(1-25))、SP-C以及几个SP-B(1-25)突变体,其中带电荷和亲水的残基被疏水残基取代,或反之亦然。我们观察到两种折叠机制:通过波动放大进行折叠和围绕缺陷成核进行折叠。第一种机制在含有POPG或肽的单层中观察到,而第二种机制仅在有肽存在时观察到,并且涉及肽通过脂质介导聚集到一个缺陷中,折叠可从该缺陷处成核。从缺陷处的折叠成核显示出对肽的疏水特性的依赖性;如果疏水残基的数量显著减少,则单层折叠不会发生。向DPPC单层中添加POPG或肽具有流化作用,有助于单层折叠。相比之下,添加PA对含有SP-C的DPPC单层具有电荷依赖性的凝聚作用。肽似乎在折叠过程中起重要作用,并且比POPG为折叠提供更大的驱动力。除了促进折叠形成外,肽还表现出融合行为,这可导致表面细化。

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