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两种截然不同的拉伸 DNA 状态。

Two distinct overstretched DNA states.

机构信息

Research Centre of Excellence in Mechanobiology, 117543, Singapore.

出版信息

Nucleic Acids Res. 2010 Sep;38(16):5594-600. doi: 10.1093/nar/gkq309. Epub 2010 Apr 30.

Abstract

The DNA double helix undergoes an 'overstretching' transition in a narrow force range near 65 pN. Despite numerous studies the basic question of whether the strands are separated or not remains controversial. Here we show that overstretching in fact involves two distinct types of double-helix reorganization: slow hysteretic 'unpeeling' of one strand off the other; and a fast, non-hysteretic transition to an elongated double-stranded form. We demonstrate that the relative fraction of these two overstretched forms is sensitive to factors that affect DNA base pair stability, including DNA sequence, salt concentration and temperature. The balance between the two forms shifts near physiological solution conditions. This result, in addition to establishing the existence of an overstretched double-stranded state, also shows that double helix physical properties are tuned so that either unpeeling or overextension can be selected via small changes in molecule environment.

摘要

DNA 双螺旋在接近 65 pN 的狭窄力范围内经历“超拉伸”转变。尽管进行了大量研究,但关于链是否分离的基本问题仍然存在争议。在这里,我们表明,超拉伸实际上涉及两种不同类型的双链重组:缓慢滞后的“解缠”,即一条链从另一条链上缓慢解缠;以及快速、非滞后的转变为伸长的双链形式。我们证明,这两种超拉伸形式的相对比例对影响 DNA 碱基对稳定性的因素敏感,包括 DNA 序列、盐浓度和温度。两种形式之间的平衡在接近生理溶液条件时发生变化。除了证明超拉伸双链状态的存在外,这一结果还表明,双链的物理性质是经过调整的,因此通过分子环境的微小变化,可以选择解缠或超拉伸。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0997/2938222/33222003d475/gkq309f1.jpg

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