Leyrat Cédric, Gérard Francine C A, de Almeida Ribeiro Euripedes, Ivanov Ivan, Ruigrok Rob W H, Jamin Marc
Unit of Virus Host Cell Interactions, UMI 3265 UJF-EMBL-CNRS, 6 rue Jules Horowitz, 38042 Grenoble Cedex 9, France.
Protein Pept Lett. 2010 Aug;17(8):979-87. doi: 10.2174/092986610791498939.
Rhabdoviridae are single stranded negative sense RNA viruses. The viral RNA condensed by the nucleoprotein (N), the phosphoprotein (P) and the large subunit (L) of the RNA-dependent RNA polymerase are the viral components of the transcription/replication machineries. Both P and N contain intrinsically disordered regions (IDRs) that play different roles in the virus life cycle. Here, we describe the modular organization of P based on recent structural, biophysical and bioinformatics data. We show how flexible loops in N participate in the attachment of P to the N-RNA template by an induced-fit mechanism. Finally, we discuss the roles of IDRs in the mechanism of replication/transcription, and propose a new model for the interaction of the L subunit with its N-RNA template.
弹状病毒科是单链负义RNA病毒。由核蛋白(N)、磷蛋白(P)和RNA依赖性RNA聚合酶的大亚基(L)凝聚而成的病毒RNA是转录/复制机制的病毒组成部分。P和N都含有内在无序区域(IDR),它们在病毒生命周期中发挥着不同的作用。在这里,我们基于最近的结构、生物物理和生物信息学数据描述了P的模块化组织。我们展示了N中的柔性环如何通过诱导契合机制参与P与N-RNA模板的结合。最后,我们讨论了IDR在复制/转录机制中的作用,并提出了L亚基与其N-RNA模板相互作用的新模型。